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References

Applications of Sedfit

Applications and Methods of Sedphat

Methods of Sedfit

Recommended referencing of Sedfit

Publications used for the development of Sedfit

Report a new reference

 

Recommended referencing of SEDFIT

Generally, for referencing Sedfit in publications I would suggest citing one of the following publications according to which feature of Sedfit is being used.  In case of any doubt, I would recommend 

P. Schuck (2000) Size distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling. Biophysical Journal 78:1606-1619.  

A comparison of different ultracentrifugal analysis methods for studying size-distributions, including c(s) and c(M) is

P. Schuck, M.S. Perugini, N.R. Gonzales, G.J. Howlett, and D. Schubert (2002) Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems.  Biophysical Journal 82:1096-1111  

A general introduction to analytical ultracentrifugation can be found in 

J. Lebowitz, M.S. Lewis, P. Schuck (2002) Modern Analytical Ultracentrifugation in Protein Science - A Tutorial Review.  Protein Science 11:2067-2079 

An introduction to use sedimentation velocity for the study of protein self-association is

P. Schuck (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation.  Analytical Biochemistry 320:104-124

 

When using the size-and-shape distributions c(s,M) or the general c(s,*), please reference

P.H. Brown, P. Schuck (2006) Macromolecular size-and-shape distributions by sedimentation velocity analytical ultracentrifugation. Biophysical Journal 90:4651-4661

 

When using discrete Lamm equation solutions, please reference

P.H. Brown, P. Schuck (2008) A new adaptive grid-size algorithm for the simulation of sedimentation velocity profiles in analytical ultracentrifugation. Computer Physics Communications 178(2):105-120

 

 

list of references for the mathematical approaches implemented in Sedfit

* P. Schuck. (2009) On computational approaches for size-and-shape distributions from sedimentation velocity analytical ultracentrifugation.  EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS   Epub

* Brown PH, Balbo A, Schuck P  On the analysis of sedimentation velocity in the study of protein complexes (2009) EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS   Volume: 38   Issue: 8   Pages: 1079-1099   Published: OCT 2009

* P.H. Brown, A. Balbo, and P. Schuck (2008) A Bayesian approach for quantifying trace amounts of antibody aggregates by sedimentation velocity analytical ultracentrifugation.  AAPS Journal 10:481-493

* P.H. Brown, P. Schuck (2007) A new adaptive grid-size algorithm for the simulation of sedimentation velocity profiles in analytical ultracentrifugation. Computer Physics Communications 178 (2008) 105-120

* P.H. Brown, A. Balbo, P. Schuck (2007) Using prior knowledge in the determination of macromolecular size-distributions by analytical ultracentrifugation.
Biomacromolecules 8 (2007) 2011-2024

* P.H. Brown, P. Schuck (2006) Macromolecular size-and-shape distributions by sedimentation velocity analytical ultracentrifugation. Biophysical Journal 90:4651-4661

* J. Dam, P. Schuck (2005) Sedimentation velocity analysis of heterogeneous protein-protein interactions: Sedimentation coefficient distributions c(s) and asymptotic boundary profiles from Gilbert-Jenkins theory.  Biophysical Journal 89:651-666 [properties of c(s) when applied to for reacting systems]

* J. Dam, C.A. Velikovsky, R.A. Mariuzza, C. Urbanke, P. Schuck (2005) Sedimentation velocity analysis of heterogeneous protein-protein interactions: Lamm equation modeling and sedimentation coefficient distributions c(s).  Biophysical Journal 89:619-634 [properties of c(s) when applied to for reacting systems]

* P. Schuck. (2005) Diffusion-deconvoluted sedimentation coefficient distributions for the analysis of interacting and non-interacting protein mixtures. In: Modern Analytical Ultracentrifugation: Techniques and Methods (D.J. Scott, S.E. Harding, A.J. Rowe, Editors) The Royal Society of Chemistry, Cambridge (in press) (get preprint)

* J. Dam, P. Schuck (2004) Calculating sedimentation coefficient distributions by direct modeling of sedimentation velocity concentration profiles.  Methods in Enzymology 384:185-212 [comprehensive review of the concepts and numerical methods]

* P. Schuck (2004) A model for sedimentation in inhomogeneous media. I. Dynamic density gradients from sedimenting co-solutes. Biophysical Chemistry 108:187-200

* P. Schuck (2004) A model for sedimentation in inhomogeneous media. II. Compressibility of aqueous and organic solvents. Biophysical Chemistry 108:201-214

* P. Schuck (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation.  Analytical Biochemistry 320:104-124

* P. Schuck, M.S. Perugini, N.R. Gonzales, G.J. Howlett, and D. Schubert. (2002) Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems.  Biophysical Journal 82:1096-1111 (get preprint) [non-linear regression of c(s) and comparison with other methods, extrapolation of ls-g*(s) to infinite time]

* Solovyova, A., P. Schuck, L. Costenaro, C. Ebel (2001) Non-ideality by sedimentation velocity of halophilic malate dehydrogenase in complex solvents.  Biophysical Journal 81:1868-1880 [concentration-dependent sedimentation] 

* P. Schuck and P. Rossmanith (2000) Determination of the sedimentation coefficient distribution g*(s) by least-squares boundary modeling. Biopolymers 54:328-341.  [analysis of g*(s) and introduction of the ls-g*(s) method without Dt-broadening]

* P. Schuck (2000) Size distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling. Biophysical Journal 78:1606-1619.  [continuous size-distribution analysis c(s) and c(M) with Tikhonov-Phillips and maximum entropy regularization]

* P. Schuck and B. Demeler (1999) Direct sedimentation analysis of interference-optical data in analytical ultracentrifugation. Biophysical Journal 76:2288-2296.  [introduces algebraic noise decomposition allowing systematic noise and jitter to be directly modeled]

* P. Schuck (1998) Sedimentation analysis of non-interacting and self-associating solutes using numerical solutions to the Lamm equation. Biophysical Journal 75:1503-1512.  [introduction of new moving grid finite element method, extension to self-associating systems by using predictor-corrector scheme]

* P. Schuck, C.E. McPhee, and G.J. Howlett. (1998) Determination of sedimentation coefficients for small peptides. Biophysical Journal 74:466-474.  [use of finite difference and Claverie's finite element method in Crank-Nicholson scheme for fast direct boundary modeling]

 

applications of sedfit:

    publications with use of the c(s) method for sedimentation velocity analysis

 

... unfortunately, updating this list has discontinued - there are now more than 1000 references to c(s) in the published literature...

 

Mutation of Glu-166 blocks the substrate-induced dimerization of SARS coronavirus main protease; Shu-Chun Cheng, Gu-Gang Chang, Chi-Yuan Chou 7 April 2010 Biophys. J. 98(7) pp. 1327-1336

Promiscuous Substrate Recognition in Folding and Assembly Activities of the Trigger Factor Chaperone; Erik Martinez-Hackert, Wayne A. Hendrickson 4 September 2009 Cell 138(5) pp. 923 - 934

Large-Scale Structural Analysis of the Classical Human Protein Tyrosine Phosphatome ; Alastair J. Barr, Emilie Ugochukwu, Wen Hwa Lee, Oliver N.F. King, Panagis Filippakopoulos, Ivan Alfano, Pavel Savitsky, Nicola A. Burgess-Brown, Susanne Müller, Stefan Knapp 23 January 2009 Cell 136(2) pp. 352 – 363

Unusual Thermal Disassembly of the SPFH Domain Oligomer from Pyrococcus horikoshii ; Yohta Kuwahara, Satoru Unzai, Takashi Nagata, Yoko Hiroaki, Hideshi Yokoyama, Ikuo Matsui, Takahisa Ikegami, Yoshinori Fujiyoshi, Hidekazu Hiroaki 7 October 2009 Biophysical Journal 97(7) pp. 2034 - 2043

Structural Analysis of the GGDEF-EAL Domain-Containing c-di-GMP Receptor FimX ; Marcos V.A.S. Navarro, Nabanita De, Narae Bae, Qi Wang, Holger Sondermann 12 August 2009 Structure 17(8) pp. 1104 - 1116

Molecular Mechanism of Distinct Salt-Dependent Enzyme Activity of Two Halophilic Nucleoside Diphosphate Kinases ; Akihiro Yamamura, Takefumi Ichimura, Masahiro Kamekura, Toru Mizuki, Ron Usami, Tsukasa Makino, Jun Ohtsuka, Ken-ichi Miyazono, Masahiko Okai, Koji Nagata et al. 3 June 2009 Biophysical Journal 96(11) pp. 4692 - 4700

Structure, Assembly, and Mechanism of a PLP-Dependent Dodecameric l-Aspartate β-Decarboxylase ; Hui-Ju Chen, Tzu-Ping Ko, Chia-Yin Lee, Nai-Chen Wang, Andrew H.-J. Wang 15 April 2009 Structure 17(4) pp. 517 - 529

Hybrid Structural Model of the Complete Human ESCRT-0 Complex ; Xuefeng Ren, Daniel P. Kloer, Young C. Kim, Rodolfo Ghirlando, Layla F. Saidi, Gerhard Hummer, James H. Hurley 11 March 2009 Structure 17(3) pp. 406 - 416

Differences in prion strain conformations result from non-native interactions in a nucleus ; Yumiko Ohhashi, Kazuki Ito, Brandon H Toyama, Jonathan S Weissman, Motomasa Tanaka ; Nature Chemical Biology (17 January 2010), doi:10.1038/nchembio.306 Article

Studies of the molecular mechanism of caspase-8 activation by solution NMR ; N Keller, M G Grütter, O Zerbe, Cell Death and Differentiation (23 October 2009), doi:10.1038/cdd.2009.155 Original Paper

Conformational stability and activity of p73 require a second helix in the tetramerization domain ; D Coutandin, F Löhr, F H Niesen, T Ikeya, T A Weber, B Schäfer, E M Zielonka, A N Bullock, A Yang, P Güntert, et al.; Cell Death and Differentiation 16, 1582-1589 (18 September 2009), doi:10.1038/cdd.2009.139 Original Paper

ErbB2 resembles an autoinhibited invertebrate epidermal growth factor receptor ; Diego Alvarado, Daryl E. Klein, Mark A. Lemmon, Nature 461, 287-291 (30 August 2009) doi:10.1038/nature08297 Letter

The structural basis of Arf effector specificity: the crystal structure of ARF6 in a complex with JIP4 ; Tatiana Isabet, Guillaume Montagnac, Karine Regazzoni, Bertrand Raynal, Fatima El Khadali, Patrick England, Michel Franco, Philippe Chavrier, Anne Houdusse, Julie Ménétrey, The EMBO Journal 28, 2835-2845 (30 July 2009), doi:10.1038/emboj.2009.209 Article

FGF9 monomer–dimer equilibrium regulates extracellular matrix affinity and tissue diffusion ; Masayo Harada, Hirotaka Murakami, Akihiko Okawa, Noriaki Okimoto, Shuichi Hiraoka, Taka Nakahara, Ryogo Akasaka, Yo-ichi Shiraishi, Noriyuki Futatsugi, Yoko Mizutani-Koseki, et al.; Nature Genetics 41, 289-298 (15 February 2009), doi:10.1038/ng.316 Article

Xinwang Cao, Ünal Coskun, Manfred Rössle, Sabine B. Buschhorn, Michal Grzybek, Timothy R. Dafforn, Marc Lenoir, Michael Overduin, and Kai Simons; Golgi protein FAPP2 tubulates membranesPNAS 2009 106:21121-21125; published online before print November 25, 2009, doi:10.1073/pnas.0911789106

Gunes Bozkurt, Goran Stjepanovic, Fabio Vilardi, Stefan Amlacher, Klemens Wild, Gert Bange, Vincenzo Favaloro, Karsten Rippe, Ed Hurt, Bernhard Dobberstein, and Irmgard Sinning; Structural insights into tail-anchored protein binding and membrane insertion by Get3PNAS 2009 106:21131-21136; published online before print November 30, 2009, doi:10.1073/pnas.0910223106

Vivien Nagy, Kuo-Chiang Hsia, Erik W. Debler, Martin Kampmann, Andrew M. Davenport, Günter Blobel, and André Hoelz; Structure of a trimeric nucleoporin complex reveals alternate oligomerization statesPNAS 2009 106:17693-17698; published online before print October 1, 2009, doi:10.1073/pnas.0909373106

Hyuk-Soo Seo, Yingli Ma, Erik W. Debler, Daniel Wacker, Stephan Kutik, Günter Blobel, and André Hoelz;  Structural and functional analysis of Nup120 suggests ring formation of the Nup84 complexPNAS 2009 106:14281-14286; published online before print August 11, 2009, doi:10.1073/pnas.0907453106

Zhaochun Chen, Mahtab Moayeri, Huaying Zhao, Devorah Crown, Stephen H. Leppla, and Robert H. Purcell; Potent neutralization of anthrax edema toxin by a humanized monoclonal antibody that competes with calmodulin for edema factor bindingPNAS 2009 106:13487-13492; published online before print July 27, 2009, doi:10.1073/pnas.0906581106

Sergei A. Grigoryev, Gaurav Arya, Sarah Correll, Christopher L. Woodcock, and Tamar Schlick; Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactionsPNAS 2009 106:13317-13322; published online before print July 27, 2009, doi:10.1073/pnas.0903280106

Charu Chaudhry, Andrew J. R. Plested, Peter Schuck, and Mark L. Mayer; Energetics of glutamate receptor ligand binding domain dimer assembly are modulated by allosteric ionsPNAS 2009 106:12329-12334; published online before print July 15, 2009, doi:10.1073/pnas.0904175106

Jimmy D. Dikeakos, Paola Di Lello, Marie-Josée Lacombe, Rodolfo Ghirlando, Pascale Legault, Timothy L. Reudelhuber, James G. Omichinski; Functional and structural characterization of a dense core secretory granule sorting domain from the PC1/3 protease; PNAS 2009 106:7408

Huang CW, Chen YH, Chen YH, et al.; The interaction of Glu294 at the subunit interface is important for the activity and stability of goose delta-crystallin; MOLECULAR VISION   Volume: 15   Issue: 250-52   Pages: 2358-2363   Published: NOV 14 2009

Levina V, Dai WW, Knaupp AS, et al. Expression, purification and characterization of recombinant Z alpha(1)-Antitrypsin-The most common cause of alpha(1)-Antitrypsin deficiency; PROTEIN EXPRESSION AND PURIFICATION   Volume: 68   Issue: 2   Pages: 226-232   Published: DEC 2009

Veronese PK, Stafford RP, Lucius AL; The Escherichia coli ClpA Molecular Chaperone Self-Assembles into Tetramers  BIOCHEMISTRY   Volume: 48   Issue: 39   Pages: 9221-9233   Published: OCT 6 2009

Boumendjel A, McLeer-Florin A, Champelovier P, et al.A novel chalcone derivative which acts as a microtubule depolymerising agent and an inhibitor of P-gp and BCRP in in-vitro and in-vivo glioblastoma models  BMC CANCER   Volume: 9 Article Number: 242   Published: JUL 20 2009

Sainsbury S, Lane LA, Ren JS, et al.The structure of CrgA from Neisseria meningitidis reveals a new octameric assembly state for LysR transcriptional regulators NUCLEIC ACIDS RESEARCH   Volume: 37   Issue: 14   Pages: 4545-4558   Published: AUG 2009

Jamison JA, Krueger KM, Mayo JT, et al. Applying analytical ultracentrifugation to nanocrystal suspensions NANOTECHNOLOGY   Volume: 20   Issue: 35 Article Number: 355702   Published: SEP 2 2009

Hekmatara T, Gelperina S, Vogel V, et al.; Encapsulation of Water-Insoluble Drugs in Poly(butyl cyanoacrylate) Nanoparticles JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY   Volume: 9   Issue: 8   Pages: 5091-5098   Published: AUG 2009

Barends TRM, Hartmann E, Griese JJ, et al. Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase  NATURE   Volume: 459   Issue: 7249   Pages: 1015-U150   Published: JUN 18 2009

Holzer M, Vogel V, Mantele W, et al. Physico-chemical characterisation of PLGA nanoparticles after freeze-drying and storage EUROPEAN JOURNAL OF PHARMACEUTICS AND BIOPHARMACEUTICS   Volume: 72   Issue: 2   Pages: 428-437   Published: JUN 2009

Amniai L, Barbier P, Sillen A, et al. Alzheimer disease specific phosphoepitopes of Tau interfere with assembly of tubulin but not binding to microtubules FASEB JOURNAL   Volume: 23   Issue: 4   Pages: 1146-1152   Published: APR 2009

Yang SA, Noble CG, Yang DW Characterization of DLC1-SAM Equilibrium Unfolding at the Amino Acid Residue Level BIOCHEMISTRY   Volume: 48   Issue: 19   Pages: 4040-4049   Published: MAY 19 2009

Sjekloca L, Konarev PV, Eccleston J, et al. A study of the ultrastructure of Fragile-X-related proteins BIOCHEMICAL JOURNAL   Volume: 419   Pages: 347-357   Part: Part 2   Published: APR 15 2009

Alcorlo M, Jimenez M, Ortega A, et al.Analytical Ultracentrifugation Studies of Phage phi 29 Protein p6 Binding to DNA JOURNAL OF MOLECULAR BIOLOGY   Volume: 385   Issue: 5   Pages: 1616-1629   Published: FEB 6 2009

Bourdron J, Barbier P, Allegro D, et al. Caulerpenyne Binding to Tubulin: Structural Modifications by a Non Conventional Pharmacological Agent MEDICINAL CHEMISTRY   Volume: 5   Issue: 2   Pages: 182-190   Published: MAR 2009

Tauer K, Gau D, Schulze S, et al. Thermal property changes of poly(N-isopropylacrylamide) microgel particles and block copolymers COLLOID AND POLYMER SCIENCE   Volume: 287   Issue: 3   Special Issue: Sp. Iss. SI   Pages: 299-312   Published: MAR 2009

Patel TR, Morris GA, de la Torre JG, et al. Molecular Flexibility of Methylcelluloses of Differing Degree of Substitution by Combined Sedimentation and Viscosity Analysis MACROMOLECULAR BIOSCIENCE   Volume: 8   Issue: 12   Pages: 1108-1115   Published: DEC 8 2008

Zeev-Ben-Mordehai T, Paz A, Peleg Y, et al.  Amalgam, an axon guidance Drosophila adhesion protein belonging to the immunoglobulin superfamily: Over-expression, purification and biophysical characterization PROTEIN EXPRESSION AND PURIFICATION   Volume: 63   Issue: 2   Pages: 147-157   Published: FEB 2009

Nordquist KA, Dimitrova YN, Brzovic PS, et al. Structural and Functional Characterization of the Monomeric U-Box Domain from E4B  BIOCHEMISTRY   Volume: 49   Issue: 2   Pages: 347-355   Published: JAN 19 2010

Oda M, Uchiyama S, Noda M, et al. Effects of antibody affinity and antigen valence on molecular forms of immune complexes MOLECULAR IMMUNOLOGY   Volume: 47   Issue: 2-3   Pages: 357-364   Published: DEC 2009

Gabrielson JP, Arthur KK, Stoner MR, et al.Precision of protein aggregation measurements by sedimentation velocity analytical ultracentrifugation in biopharmaceutical applications ANALYTICAL BIOCHEMISTRY   Volume: 396   Issue: 2   Pages: 231-241   Published: JAN 15 2010

Hara K, Shimizu T, Unzai S, et al. Purification, crystallization and initial X-ray diffraction study of human REV7 in complex with a REV3 fragment ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS   Volume: 65   Pages: 1302-1305   Part: Part 12   Published: DEC 2009

 Bonten EJ, Campos Y, Zaitsev V, et al. Heterodimerization of the Sialidase NEU1 with the Chaperone Protective Protein/Cathepsin A Prevents Its Premature Oligomerization JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 41   Pages: 28430-28441   Published: OCT 9 2009

Kuwahara Y, Unzai S, Nagata T, et al. Unusual Thermal Disassembly of the SPFH Domain Oligomer from Pyrococcus horikoshii BIOPHYSICAL JOURNAL   Volume: 97   Issue: 7   Pages: 2034-2043   Published: OCT 7 2009

Arthur KK, Gabrielson JP, Kendrick BS, et al. Detection of Protein Aggregates by Sedimentation Velocity Analytical Ultracentrifugation (SV-AUC): Sources of Variability and Their Relative Importance JOURNAL OF PHARMACEUTICAL SCIENCES   Volume: 98   Issue: 10   Pages: 3522-3539   Published: OCT 2009

Su KL, Liao YF, Hung HC, et al.Critical Factors Determining Dimerization of Human Antizyme Inhibitor JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 39   Pages: 26768-26777   Published: SEP 25 2009

Tan AM, Henzl MT Conformational stabilities of guinea pig OCP1 and OCP2 BIOPHYSICAL CHEMISTRY   Volume: 144   Issue: 3   Pages: 108-118   Published: OCT 2009

Mahler HC, Friess W, Grauschopf U, et al. Protein Aggregation: Pathways, Induction Factors and Analysis JOURNAL OF PHARMACEUTICAL SCIENCES   Volume: 98   Issue: 9   Pages: 2909-2934   Published: SEP 2009

Hosszu LLP, Trevitt CR, Jones S, et al. Conformational Properties of beta-PrP JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 33   Pages: 21981-21990   Published: AUG 14 2009

Manso I, Torres B, Andreu JM, et al. 3-Hydroxyphenylpropionate and Phenylpropionate Are Synergistic Activators of the MhpR Transcriptional Regulator from Escherichia coli JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 32   Pages: 21218-21228   Published: AUG 7 2009

Pesiridis GS, Diamond E, Van Duyne GD Role of pICLn in Methylation of Sm Proteins by PRMT5 ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 32   Pages: 21347-21359   Published: AUG 7 2009

Olieric V, Wolff P, Takeuchi A, et al. SECIS-binding protein 2, a key player in selenoprotein synthesis, is an intrinsically disordered protein BIOCHIMIE   Volume: 91   Issue: 8   Pages: 1003-1009   Published: AUG 2009

Hsieh JY, Chen SH, Hung HC Functional Roles of the Tetramer Organization of Malic Enzyme JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 27   Pages: 18096-18105   Published: JUL 3 2009

Bee JS, Stevenson JL, Mehta B, et al. Response of a Concentrated Monoclonal Antibody Formulation to High Shear BIOTECHNOLOGY AND BIOENGINEERING   Volume: 103   Issue: 5   Pages: 936-943   Published: AUG 1 2009

Hsieh JY, Su KL, Ho PT, et al. Long-range interaction between the enzyme active site and a distant allosteric site in the human mitochondrial NAD(P)(+)-dependent malic enzyme ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS   Volume: 487   Issue: 1   Pages: 19-27   Published: JUL 1 2009

Gangelhoff TA, Mungalachetty PS, Nix JC, et al. Structural analysis and DNA binding of the HMG domains of the human mitochondrial transcription factor A ; NUCLEIC ACIDS RESEARCH   Volume: 37   Issue: 10   Pages: 3153-3164   Published: JUN 2009

Garrido F, Alfonso C, Taylor JC, et al. Subunit association as the stabilizing determinant for archaeal methionine adenosyltransferases ; BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS   Volume: 1794   Issue: 7   Pages: 1082-1090   Published: JUL 2009

Bailey MF, Angley LM, Perugini MA; Methods for sample labeling and meniscus determination in the fluorescence-detected analytical ultracentrifuge ; ANALYTICAL BIOCHEMISTRY   Volume: 390   Issue: 2   Pages: 218-220   Published: JUL 15 2009

Gupta YK, Lee TH, Edwards TA, et al.; Co-occupancy of two Pumilio molecules on a single hunchback NRE RNA-A PUBLICATION OF THE RNA SOCIETY   Volume: 15   Issue: 6   Pages: 1029-1035   Published: JUN 2009

Mack TR, Gao R, Stock AM; Probing the Roles of the Two Different Dimers Mediated by the Receiver Domain of the Response Regulator PhoB; JOURNAL OF MOLECULAR BIOLOGY   Volume: 389   Issue: 2   Pages: 349-364   Published: JUN 5 2009

Hsieh JY, Liu JH, Fang YW, et al.; Dual roles of Lys(57) at the dimer interface of human mitochondrial NAD(P)(+)-dependent malic enzyme BIOCHEMICAL JOURNAL   Volume: 420   Pages: 201-209   Part: Part 2   Published: JUN 1 2009

Demeule B, Shire SJ, Liu J; A therapeutic antibody and its antigen form different complexes in serum than in phosphate-buffered saline: A study by analytical ultracentrifugation; ANALYTICAL BIOCHEMISTRY   Volume: 388   Issue: 2   Pages: 279-287   Published: MAY 15 2009

Newman RA, Prehoda KE; Intramolecular Interactions Between the Src Homology 3 and Guanylate Kinase Domains of Discs Large Regulate Its Function in Asymmetric Cell Division ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 19   Pages: 12924-12932   Published: MAY 8 2009

Brautigam CA, Wynn RM, Chuang JL, et al.; Subunit and Catalytic Component Stoichiometries of an in Vitro Reconstituted Human Pyruvate Dehydrogenase Complex; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 19   Pages: 13086-13098   Published: MAY 8 2009

Tan A, Henzl MT; Evidence for a Ca2+-Specific Conformational Change in Avian Thymic Hormone, a High-Affinity beta-Parvalbumin ; BIOCHEMISTRY   Volume: 48   Issue: 18   Pages: 3936-3945   Published: MAY 12 2009

Warmuth S, Zimmermann I, Dutzler R; X-ray Structure of the C-Terminal Domain of a Prokaryotic Cation-Chloride Cotransporter; STRUCTURE   Volume: 17   Issue: 4   Pages: 538-546   Published: APR 15 2009

Quintero-Monzon O, Jonasson EM, Bertling E, et al.; Reconstitution and Dissection of the 600-kDa Srv2/CAP Complex ROLES FOR OLIGOMERIZATION AND COFILIN-ACTIN BINDING IN DRIVING ACTIN TURNOVER ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 16   Pages: 10923-10934   Published: APR 17 2009

White SA, Briand L, Scott DJ, et al.; Structure of rat odorant-binding protein OBP1 at 1.6 angstrom resolution ; ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY   Volume: 65   Pages: 403-410   Part: Part 5   Published: MAY 2009

Borges JC, Ramos CHI; Characterization of nucleotide-induced changes on the quaternary structure of human 70 kDa heat shock protein Hsp70.1 by analytical ultracentrifugation ; BMB REPORTS   Volume: 42   Issue: 3   Pages: 166-171   Published: MAR 31 2009

Keller N, Mares J, Zerbe O, et al.; Structural and Biochemical Studies on Procaspase-8: New Insights on Initiator Caspase Activation ; STRUCTURE   Volume: 17   Issue: 3   Pages: 438-448   Published: MAR 11 2009

Mortuza GB, Goldstone DC, Pashley C, et al.; Structure of the Capsid Amino-Terminal Domain from the Betaretrovirus, Jaagsiekte Sheep Retrovirus ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 386   Issue: 4   Pages: 1179-1192   Published: MAR 6 2009

Kurimoto K, Kuwasako K, Sandercock AM, et al.; AU-rich RNA-binding induces changes in the quaternary structure of AUH;  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS   Volume: 75   Issue: 2   Pages: 360-372   Published: MAY 1 2009

Luque D, Rivas G, Alfonso C, et al.; Infectious bursal disease virus is an icosahedral polyploid dsRNA virus ; PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   Volume: 106   Issue: 7   Pages: 2148-2152   Published: FEB 17 2009

Sisu C, Baron AJ, Branderhorst HM, et al.; The Influence of Ligand Valency on Aggregation Mechanisms for Inhibiting Bacterial Toxins ; CHEMBIOCHEM   Volume: 10   Issue: 2   Pages: 329-337   Published: JAN 26 2009

Zhou LH, Li JJ, George R, et al.; Effects of Full-Length Borealin on the Composition and Protein-Protein Interaction Activity of a Binary Chromosomal Passenger Complex ; BIOCHEMISTRY   Volume: 48   Issue: 6   Pages: 1156-1161   Published: FEB 17 2009

Liu HL, Peng XH, Zhao F, et al.; N114S mutation causes loss of ATP-induced aggregation of human phosphoribosylpyrophosphate synthetase 1 ; BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   Volume: 379   Issue: 4   Pages: 1120-1125   Published: FEB 20 2009

Bansal PK, Nourse A, Abdulle R, et al.; Sgt1 Dimerization Is Required for Yeast Kinetochore Assembly ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 6   Pages: 3586-3592   Published: FEB 6 2009

Carvalho FAO, Santiago PS, Borges JC, et al.; On the molecular mass of the extracellular hemoglobin of Glossoscolex paulistus: Analytical ultracentrifugation reexamination ; ANALYTICAL BIOCHEMISTRY   Volume: 385   Issue: 2   Pages: 257-263   Published: FEB 15 2009

Hsieh JY, Chiang YH, Chang KY, et al.; Functional role of fumarate site Glu59 involved in allosteric regulation and subunit-subunit interaction of human mitochondrial NAD(P)(+)-dependent malic enzyme: FEBS JOURNAL   Volume: 276   Issue: 4   Pages: 983-994   Published: FEB 2009

Gabrielson JP, Arthur KK, Kendrick BS, et al.; Common Excipients Impair Detection of Protein Aggregates during Sedimentation Velocity Analytical Ultracentrifugation JOURNAL OF PHARMACEUTICAL SCIENCES   Volume: 98   Issue: 1   Pages: 50-62   Published: JAN 2009

Pimentel TAPF, Yan Z, Jeffers SA, et al.; Peptide Nanoparticles as Novel Immunogens: Design and Analysis of a Prototypic Severe Acute Respiratory Syndrome Vaccine ; CHEMICAL BIOLOGY & DRUG DESIGN   Volume: 73   Issue: 1   Pages: 53-61   Published: JAN 2009

Pearce FG, Griffin MDW, Gerrard JA; Does domain swapping improve the stability of RNase A? ; BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   Volume: 382   Issue: 1   Pages: 114-118   Published: APR 24 2009

Hao XT, Ryan T, Bailey MF, et al.; Molar Mass Determination of Water-Soluble Light-Emitting Conjugated Polymers by Fluorescence-Based Analytical Ultracentrifugation MACROMOLECULES   Volume: 42   Issue: 7   Pages: 2737-2740   Published: APR 14 2009

Horii K, Brooks MT, Herr AB; Convulxin Forms a Dimer in Solution and Can Bind Eight Copies of Glycoprotein VI: Implications for Platelet Activation BIOCHEMISTRY   Volume: 48   Issue: 13   Pages: 2907-2914   Published: APR 7 2009

Borges JC, Ramos CHI; Characterization of nucleotide-induced changes on the quaternary structure of human 70 kDa heat shock protein Hsp70.1 by analytical ultracentrifugation ; BMB REPORTS   Volume: 42   Issue: 3   Pages: 166-171   Published: MAR 31 2009

Karst JC, Foucher AE, Campbell TL, et al.; The ATPase activity of an 'essential' Bacillus subtilis enzyme, YdiB, is required for its cellular function and is modulated by oligomerization ; MICROBIOLOGY-SGM   Volume: 155   Pages: 944-956   Part: Part 3   Published: MAR 2009

Thepaut M, Valladeau J, Nurisso A, et al.; Structural Studies of Langerin and Birbeck Granule: A Macromolecular Organization Model ; BIOCHEMISTRY   Volume: 48   Issue: 12   Pages: 2684-2698   Published: MAR 31 2009

Martinez-Cruz LA, Encinar JA, Kortazar D, et al.; The CBS Domain Protein MJ0729 of Methanocaldococcus jannaschii Is a Thermostable Protein with a pH-Dependent Self-Oligomerization ; BIOCHEMISTRY   Volume: 48   Issue: 12   Pages: 2760-2776   Published: MAR 31 2009

Schramm OG, Pavlov GM, van Erp HP, et al.; A Versatile Approach to Unimolecular Water-Soluble Carriers: ATRP of PEGMA with Hydrophobic Star-Shaped Polymeric Core Molecules as an Alternative for PEGylation ; MACROMOLECULES   Volume: 42   Issue: 6   Pages: 1808-1816   Published: MAR 24 2009

Batt SM, Bingle LEH, Dafforn TR, et al.; Bacterial Genome Partitioning: N-Terminal Domain of IncC Protein Encoded by Broad-Host-Range Plasmid RK2 Modulates Oligomerisation and DNA Binding ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 385   Issue: 5   Pages: 1361-1374   Published: FEB 6 2009

Mortuza GB, Goldstone DC, Pashley C, et al.; Structure of the Capsid Amino-Terminal Domain from the Betaretrovirus, Jaagsiekte Sheep Retrovirus ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 386   Issue: 4   Pages: 1179-1192   Published: MAR 6 2009

Eichner T, Radford SE; A Generic Mechanism of beta(2)-Microglobulin Amyloid Assembly at Neutral pH Involving a Specific Proline Switch ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 386   Issue: 5   Pages: 1312-1326   Published: MAR 13 2009

Harder ME, Malencik DA, Yan XG, et al.; Equilibrium unfolding of the retinoid X receptor ligand binding domain and characterization of an unfolding intermediate; BIOPHYSICAL CHEMISTRY   Volume: 141   Issue: 1   Pages: 1-10   Published: APR 2009

Arisaka F, Arakawa T, Niikura T, et al.; Active Form of Neuroprotective Humanin, HN, and Inactive Analog, S7A-HN, are Monomeric and Disordered in Aqueous Phosphate Solution at pH 6.0; No Correlation of Solution Structure with Activity ; PROTEIN AND PEPTIDE LETTERS   Volume: 16   Issue: 2   Pages: 132-137   Published: FEB 2009

Kirchner E, Guglielmi KM, Strauss HM, et al.; Structure of Reovirus sigma 1 in Complex with Its Receptor Junctional Adhesion Molecule-A ; PLOS PATHOGENS   Volume: 4   Issue: 12 Article Number: e1000235   Published: DEC 2008

Jenei ZA, Borthwick K, Zammit VA, et al.; Self-association of Transmembrane Domain 2 (TM2), but Not TM1, in Carnitine Palmitoyltransferase 1A ROLE OF GXXXG(A) MOTIFS ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 11   Pages: 6988-6997   Published: MAR 13 2009

Fesinmeyer RM, Hogan S, Saluja A, et al.; Effect of Ions on Agitation- and Temperature-Induced Aggregation Reactions of Antibodies ; PHARMACEUTICAL RESEARCH   Volume: 26   Issue: 4   Pages: 903-913   Published: APR 2009

Akerboom J, Rivera JDV, Guilbe MMR, et al. Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 10   Pages: 6455-6464   Published: MAR 6 2009

Bukach OV, Glukhova AE, Seit-Nebi AS, et al.; Heterooligomeric complexes formed by human small heat shock proteins HspB1 (Hsp27) and HspB6 (Hsp20) ; BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS   Volume: 1794   Issue: 3   Pages: 486-495   Published: MAR 2009

Mohl BP, Barr JN; Investigating the specificity and stoichiometry of RNA binding by the nucleocapsid protein of Bunyamwera virus RNA-A PUBLICATION OF THE RNA SOCIETY   Volume: 15   Issue: 3   Pages: 391-399   Published: MAR 2009

Liu XQ, Xu LF, Liu YW, et al.; Crystal structure of the hexamer of human heat shock factor binding protein 1 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS   Volume: 75   Issue: 1   Pages: 1-11   Published: APR 2009

Halouska S, Zhou YZ, Becker DE, et al.; Solution structure of the Pseudomanas putida protein PpPutA45 and its DNA complex ; PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS   Volume: 75   Issue: 1   Pages: 12-27   Published: APR 2009

Watanabe M, Heddle JG, Kikuchi K, et al.; The nature of the TRAP-Anti-TRAP complex ; PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   Volume: 106   Issue: 7   Pages: 2176-2181   Published: FEB 17 2009

Tsai CW, Duggan PF, Jin AJ, et al.; Characterization of a protective Escherichia coli-expressed Plasmodium falciparum merozoite surface protein 3 indicates a non-linear, multi-domain structure ; MOLECULAR AND BIOCHEMICAL PARASITOLOGY   Volume: 164   Issue: 1   Pages: 45-56   Published: MAR 2009

Jenkinson ER, Costa A, Leech AP, et al.; Mutations in Subdomain B of the Minichromosome Maintenance (MCM) Helicase Affect DNA Binding and Modulate Conformational Transitions ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 9   Pages: 5654-5661   Published: FEB 27 2009

Ansar W, Habib SH, Roy S, et al.; Unraveling the C-reactive Protein Complement-Cascade in Destruction of Red Blood Cells: Potential Pathological Implications in Plasmodium Falciparum Malaria ; CELLULAR PHYSIOLOGY AND BIOCHEMISTRY   Volume: 23   Issue: 1-3   Pages: 175-190   Published: 2009

Crist RM, Datta SAK, Stephen AG, et al.; Assembly Properties of Human Immunodeficiency Virus Type 1 Gag-Leucine Zipper Chimeras: Implications for Retrovirus Assembly JOURNAL OF VIROLOGY   Volume: 83   Issue: 5   Pages: 2216-2225   Published: MAR 1 2009

Tauer K, Gau D, Schulze S, et al.; Thermal property changes of poly(N-isopropylacrylamide) microgel particles and block copolymers ; COLLOID AND POLYMER SCIENCE   Volume: 287   Issue: 3   Special Issue: Sp. Iss. SI   Pages: 299-312   Published: MAR 2009

Sisu C, Baron AJ, Branderhorst HM, et al.; The Influence of Ligand Valency on Aggregation Mechanisms for Inhibiting Bacterial Toxins ; CHEMBIOCHEM   Volume: 10   Issue: 2   Pages: 329-337   Published: JAN 26 2009

Neira JL, Roman-Trufero M, Contreras LM, et al.; The Transcriptional Repressor RYBP Is a Natively Unfolded Protein Which Folds upon Binding to DNA; BIOCHEMISTRY   Volume: 48   Issue: 6   Pages: 1348-1360   Published: FEB 17 2009

Nemecek D, Overman SA, Hendrix RW, et al.; Unfolding Thermodynamics of the Delta-Domain in the Prohead I Subunit of Phage HK97: Determination by Factor Analysis of Raman Spectra ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 385   Issue: 2   Pages: 628-641   Published: JAN 16 2009

Bansal PK, Nourse A, Abdulle R, et al.; Sgt1 Dimerization Is Required for Yeast Kinetochore Assembly ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 6   Pages: 3586-3592   Published: FEB 6 2009

Loh PG, Yang HS, Walsh MA, et al.; Structural basis for translational inhibition by the tumour suppressor Pdcd4 ; EMBO JOURNAL   Volume: 28   Issue: 3   Pages: 274-285   Published: FEB 4 2009

Thibeault D, Massariol MJ, Zhao SP, et al.; Use of the Fused NS4A Peptide-NS3 Protease Domain To Study the Importance of the Helicase Domain for Protease Inhibitor Binding to Hepatitis C Virus NS3-NS4A ; BIOCHEMISTRY   Volume: 48   Issue: 4   Pages: 744-753   Published: FEB 3 2009

Carvalho FAO, Santiago PS, Borges JC, et al.; On the molecular mass of the extracellular hemoglobin of Glossoscolex paulistus: Analytical ultracentrifugation reexamination ; ANALYTICAL BIOCHEMISTRY   Volume: 385   Issue: 2   Pages: 257-263   Published: FEB 15 2009

Wagner SC, Roskamp M, Colfen H, et al.; Switchable electrostatic interactions between gold nanoparticles and coiled coil peptides direct colloid assembly ; ORGANIC & BIOMOLECULAR CHEMISTRY   Volume: 7   Issue: 1   Pages: 46-51   Published: 2009

Sun QX, Collins R, Huang SF, et al.; Structural Basis for the Inhibition Mechanism of Human Cystathionine gamma-Lyase, an Enzyme Responsible for the Production of H2S JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 5   Pages: 3076-3085   Published: JAN 30 2009

Hsieh JY, Chiang YH, Chang KY, et al.; Functional role of fumarate site Glu59 involved in allosteric regulation and subunit-subunit interaction of human mitochondrial NAD(P)(+)-dependent malic enzyme ; FEBS JOURNAL   Volume: 276   Issue: 4   Pages: 983-994   Published: FEB 2009

Barr AJ, Ugochukwu E, Lee WH, et al.; Large-Scale Structural Analysis of the Classical Human Protein Tyrosine Phosphatome ; CELL   Volume: 136   Issue: 2   Pages: 352-363   Published: JAN 23 2009

Rodriguez-Rodriguez M, Tello D, Yelamos B, et al.; Structural properties of the ectodomain of hepatitis C virus E2 envelope protein ; VIRUS RESEARCH   Volume: 139   Issue: 1   Pages: 91-99   Published: JAN 2009

Gokarn YR, Fesinmeyer RM, Saluja A, et al.; Ion-specific modulation of protein interactions: Anion-induced, reversible oligomerization of a fusion protein ; PROTEIN SCIENCE   Volume: 18   Issue: 1   Pages: 169-179   Published: JAN 2009

Bannwarth L, Rose T, Dufau L, et al.; Dimer Disruption and Monomer Sequestration by Alkyl Tripeptides Are Successful Strategies for Inhibiting Wild-Type and Multidrug-Resistant Mutated HIV-1 Proteases ; BIOCHEMISTRY   Volume: 48   Issue: 2   Pages: 379-387   Published: JAN 20 2009

Debler EW, Ma Y, Seo HS, et al.; A Fence-like Coat for the Nuclear Pore Membrane ; MOLECULAR CELL   Volume: 32   Issue: 6   Pages: 815-826   Published: DEC 26 2008

Jian XY, Brown P, Schuck P, et al.; Autoinhibition of Arf GTPase-activating Protein Activity by the BAR Domain in ASAP1 ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 3   Pages: 1652-1663   Published: JAN 16 2009

Chenal A, Guijarro JI, Raynal B, et al.; RTX Calcium Binding Motifs Are Intrinsically Disordered in the Absence of Calcium JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 3   Pages: 1781-1789   Published: JAN 16 2009

Sellick CA, Jowitt TA, Reece RJ; The Effect of Ligand Binding on the Galactokinase Activity of Yeast Gal1p and Its Ability to Activate Transcription JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 1   Pages: 229-236   Published: JAN 2 2009

Salwiczek M, Samsonov S, Vagt T, et al.; Position-Dependent Effects of Fluorinated Amino Acids on the Hydrophobic Core Formation of a Heterodimeric Coiled Coil; CHEMISTRY-A EUROPEAN JOURNAL   Volume: 15   Issue: 31   Pages: 7628-7636   Published: 2009

Mayberry LK, Allen ML, Dennis MD, et al.; Evidence for Variation in the Optimal Translation Initiation Complex: Plant eIF4B, eIF4F, and eIF(iso)4F Differentially Promote Translation of mRNAs ; PLANT PHYSIOLOGY   Volume: 150   Issue: 4   Pages: 1844-1854   Published: AUG 2009

Okemefuna AI, Nan R, Gor J, et al.; Electrostatic Interactions Contribute to the Folded-back Conformation of Wild Type Human Factor H JOURNAL OF MOLECULAR BIOLOGY   Volume: 391   Issue: 1   Pages: 98-118   Published: AUG 7 2009

Okemefuna AI, Li KY, Nan R, et al.; Multimeric Interactions between Complement Factor H and Its C3d Ligand Provide New Insight on Complement Regulation; JOURNAL OF MOLECULAR BIOLOGY   Volume: 391   Issue: 1   Pages: 119-135   Published: AUG 7 2009

Bhardwaj A, Walker-Kopp N, Casjens SR, et al.; An Evolutionarily Conserved Family of Virion Tail Needles Related to Bacteriophage P22 gp26: Correlation between Structural Stability and Length of the alpha-Helical Trimeric Coiled Coil ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 391   Issue: 1   Pages: 227-245   Published: AUG 7 2009

Tabarani G, Thepaut M, Stroebel D, et al.; DC-SIGN Neck Domain Is a pH-sensor Controlling Oligomerization SAXS AND HYDRODYNAMIC STUDIES OF EXTRACELLULAR DOMAIN ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 32   Pages: 21229-21240   Published: AUG 7 2009

Pompidor G, Girard E, Maillard A, et al.; Biostructural analysis of the metal-sensor domain of CnrX from Cupriavidus metallidurans CH34 ; ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY   Volume: 96   Issue: 2   Pages: 141-148   Published: AUG 2009

Blaho DV, Miranker AD; Delineating the Conformational Elements Responsible for Cu2+-Induced Oligomerization of beta-2 Microglobulin ; BIOCHEMISTRY   Volume: 48   Issue: 28   Pages: 6610-6617   Published: JUL 21 2009

Werbeck ND, Kellner JN, Barends TRM, et al. Nucleotide Binding and Allosteric Modulation of the Second AAA plus Domain of C1pB Probed by Transient Kinetic Studies BIOCHEMISTRY   Volume: 48   Issue: 30   Pages: 7240-7250   Published: AUG 4 2009

Jensen JK, Dolmer K, Schar C, et al.; Receptor-associated protein (RAP) has two high-affinity binding sites for the low-density lipoprotein receptor-related protein (LRP): consequences for the chaperone functions of RAP ; BIOCHEMICAL JOURNAL   Volume: 421   Pages: 273-282   Part: Part 2   Published: JUL 15 2009

Lawson AJ, Walker EA, White SA, et al.; Mutations of key hydrophobic surface residues of 11 beta-hydroxysteroid dehydrogenase type 1 increase solubility and monodispersity in a bacterial expression system ; PROTEIN SCIENCE   Volume: 18   Issue: 7   Pages: 1552-1563   Published: JUL 2009

Leonard PG, Ono S, Gor J, et al.; Investigation of the self-association and hetero-association interactions of H-NS and StpA from Enterobacteria MOLECULAR MICROBIOLOGY   Volume: 73   Issue: 2   Pages: 165-179   Published: JUL 2009

Hsieh JY, Chen SH, Hung HC; Functional Roles of the Tetramer Organization of Malic Enzyme ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 27   Pages: 18096-18105   Published: JUL 3 2009

Bee JS, Stevenson JL, Mehta B, et al.; Response of a Concentrated Monoclonal Antibody Formulation to High Shear ; BIOTECHNOLOGY AND BIOENGINEERING   Volume: 103   Issue: 5   Pages: 936-943   Published: AUG 1 2009

Ramsey JD, Gill ML, Kamerzell TJ, et al.; Using Empirical Phase Diagrams to Understand the Role of Intramolecular Dynamics in Immunoglobulin G Stability; JOURNAL OF PHARMACEUTICAL SCIENCES   Volume: 98   Issue: 7   Pages: 2432-2447   Published: JUL 2009

Heinicke LA, Wong CJ, Lary J, et al.; RNA Dimerization Promotes PKR Dimerization and Activation JOURNAL OF MOLECULAR BIOLOGY   Volume: 390   Issue: 2   Pages: 319-338   Published: JUL 10 2009

Tran TL, Castagne N, Dubosclard V, et al.; The Respiratory Syncytial Virus M2-1 Protein Forms Tetramers and Interacts with RNA and P in a Competitive Manner; JOURNAL OF VIROLOGY   Volume: 83   Issue: 13   Pages: 6363-6374   Published: JUL 2009

Gil-Cruz C, Bobat S, Marshall JL, et al.; The porin OmpD from nontyphoidal Salmonella is a key target for a protective B1b cell antibody response ; PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   Volume: 106   Issue: 24   Pages: 9803-9808   Published: JUN 16 2009

Bogdanova E, Zakharova M, Streeter S, James Taylor, et al.; Transcription regulation of restriction-modification system Esp1396I ; NUCLEIC ACIDS RESEARCH   Volume: 37   Issue: 10   Pages: 3354-3366   Published: JUN 2009

Kayser H, Mann K, Machaidze G, et al. Isolation, Characterisation and Molecular Imaging of a High-Molecular-Weight Insect Biliprotein, a Member of the Hexameric Arylphorin Protein Family ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 389   Issue: 1   Pages: 74-89   Published: MAY 29 2009

James PF, Dogovski C, Dobson RCJ, et al.; Aromatic residues in the C-terminal helix of human apoC-I mediate phospholipid interactions and particle morphology; JOURNAL OF LIPID RESEARCH   Volume: 50   Issue: 7   Pages: 1384-1394   Published: JUL 2009

Pu MM, Fang XM, Redfield AG, et al.; Correlation of Vesicle Binding and Phospholipid Dynamics with Phospholipase C Activity INSIGHTS INTO PHOSPHATIDYLCHOLINE ACTIVATION AND SURFACE DILUTION INHIBITION ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 24   Pages: 16099-16107   Published: JUN 12 2009

Li CH, Li TS; Application of Vibrational Spectroscopy to the Structural Characterization of Monoclonal Antibody and its Aggregate ; CURRENT PHARMACEUTICAL BIOTECHNOLOGY   Volume: 10   Issue: 4   Pages: 391-399   Published: JUN 2009

Garrido F, Alfonso C, Taylor JC, et al.; Subunit association as the stabilizing determinant for archaeal methionine adenosyltransferases BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS   Volume: 1794   Issue: 7   Pages: 1082-1090   Published: JUL 2009

Gupta YK, Lee TH, Edwards TA, et al.; Co-occupancy of two Pumilio molecules on a single hunchback NRE ; RNA-A PUBLICATION OF THE RNA SOCIETY   Volume: 15   Issue: 6   Pages: 1029-1035   Published: JUN 2009

Kumar J, Schuck P, Jin RS, et al.; The N-terminal domain of GluR6-subtype glutamate receptor ion channels ; NATURE STRUCTURAL & MOLECULAR BIOLOGY   Volume: 16   Issue: 6   Pages: 631-U58   Published: JUN 2009

Thibault J, Faudry E, Ebel C, et al.; Anti-activator ExsD Forms a 1:1 Complex with ExsA to Inhibit Transcription of Type III Secretion Operons ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 23   Pages: 15762-15770   Published: JUN 5 2009

Hsieh JY, Liu JH, Fang YW, et al.; Dual roles of Lys(57) at the dimer interface of human mitochondrial NAD(P)(+)-dependent malic enzyme ; BIOCHEMICAL JOURNAL   Volume: 420   Pages: 201-209   Part: Part 2   Published: JUN 1 2009

Kroe RR, Laue TM; NUTS and BOLTS: Applications of fluorescence-detected sedimentation ; ANALYTICAL BIOCHEMISTRY   Volume: 390   Issue: 1   Pages: 1-13   Published: JUL 1 2009

Berry R, Jowitt TA, Ferrand J, et al.; Role of dimerization and substrate exclusion in the regulation of bone morphogenetic protein-1 and mammalian tolloid; PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   Volume: 106   Issue: 21   Pages: 8561-8566   Published: MAY 26 2009

Bourdeau RW, Malito E, Chenal A, et al. Cellular Functions and X-ray Structure of Anthrolysin O, a Cholesterol-dependent Cytolysin Secreted by Bacillus anthracis; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 21   Pages: 14645-14656   Published: MAY 22 2009

Zhang JJ, Xing X, Herr AB, et al. Crystal Structure of E-coli RecE Protein Reveals a Toroidal Tetramer for Processing Double-Stranded DNA Breaks STRUCTURE   Volume: 17   Issue: 5   Pages: 690-702   Published: MAY 13 2009

Chan KW, Lee YJ, Wang CH, et al. Single-Stranded DNA-Binding Protein Complex from Helicobacter pylori Suggests an ssDNA-Binding Surface JOURNAL OF MOLECULAR BIOLOGY   Volume: 388   Issue: 3   Pages: 508-519   Published: MAY 8 2009

Chaudhry C, Weston MC, Schuck P, et al.; Stability of ligand-binding domain dimer assembly controls kainate receptor desensitization ; EMBO JOURNAL   Volume: 28   Issue: 10   Pages: 1518-1530   Published: MAY 20 2009

Dieckmann Y, Colfen H, Hofmann H, et al.; Particle Size Distribution Measurements of Manganese-Doped ZnS Nanoparticles ; ANALYTICAL CHEMISTRY   Volume: 81   Issue: 10   Pages: 3889-3895   Published: MAY 15 2009

Goertz V, Dingenouts N, Nirschl H; Comparison of Nanometric Particle Size Distributions as Determined by SAXS, TEM and Analytical Ultracentrifuge  PARTICLE & PARTICLE SYSTEMS CHARACTERIZATION   Volume: 26   Issue: 1-2   Pages: 17-24   Published: APR 2009

van Dieck J, Fernandez-Fernandez MR, Veprintsev DB, et al.; Modulation of the Oligomerization State of p53 by Differential Binding of Proteins of the S100 Family to p53 Monomers and Tetramers ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 20   Pages: 13804-13811   Published: MAY 15 2009

Kreiner M, Byron O, Domingues D, et al.; Oligomerisation and thermal stability of polyvalent integrin alpha 5 beta 1 ligands ; BIOPHYSICAL CHEMISTRY   Volume: 142   Issue: 1-3   Pages: 34-39   Published: JUN 2009

Yang SA, Noble CG, Yang DW; Characterization of DLC1-SAM Equilibrium Unfolding at the Amino Acid Residue Level ; BIOCHEMISTRY   Volume: 48   Issue: 19   Pages: 4040-4049   Published: MAY 19 2009

Gasparian ME, Chernyak BV, Dolgikh DA, et al.; Generation of new TRAIL mutants DR5-A and DR5-B with improved selectivity to death receptor 5 APOPTOSIS   Volume: 14   Issue: 6   Pages: 778-787   Published: JUN 2009

Le Maire M, Arnou B, Olesen C, et al.; Gel chromatography and analytical ultracentrifugation to determine the extent of detergent binding and aggregation, and Stokes radius of membrane proteins using sarcoplasmic reticulum Ca2+-ATPase as an example ; NATURE PROTOCOLS   Volume: 3   Issue: 11   Pages: 1782-1795   Published: 2008

Newman RA, Prehoda KE; Intramolecular Interactions Between the Src Homology 3 and Guanylate Kinase Domains of Discs Large Regulate Its Function in Asymmetric Cell Division ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 19   Pages: 12924-12932   Published: MAY 8 2009

Gondeau C, Corradin G, Heitz F, et al.; The C-terminal domain of Plasmodium falciparum merozoite surface protein 3 self-assembles into alpha-helical coiled coil tetramer ; MOLECULAR AND BIOCHEMICAL PARASITOLOGY   Volume: 165   Issue: 2   Pages: 153-161   Published: JUN 2009

Yu QD, Oldring AP, Powlesland AS, et al.; Autonomous Tetramerization Domains in the Glycan-binding Receptors DC-SIGN and DC-SIGNR ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 387   Issue: 5   Pages: 1075-1080   Published: APR 17 2009

Okemefuna AI, Stach L, Rana S, et al.; C-reactive Protein Exists in an NaCl Concentration-dependent Pentamer-Decamer Equilibrium in Physiological Buffer; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 285   Issue: 2   Pages: 1041-1052   Published: JAN 8 2010

Okemefuna AI, Nan R, Miller A, et al.; Complement Factor H Binds at Two Independent Sites to C-reactive Protein in Acute Phase Concentrations ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 285   Issue: 2   Pages: 1053-1065   Published: JAN 8 2010

Thomsen T, Moeller JB, Schlosser A, et al.; The Recognition Unit of FIBCD1 Organizes into a Noncovalently Linked Tetrameric Structure and Uses a Hydrophobic Funnel (S1) for Acetyl Group Recognition ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 285   Issue: 2   Pages: 1229-1238   Published: JAN 8 2010

Karst JC, Perez ACS, Guijarro JI, et al.; Calmodulin-Induced Conformational and Hydrodynamic Changes in the Catalytic Domain of Bordetella pertussis Adenylate Cyclase Toxin ; BIOCHEMISTRY   Volume: 49   Issue: 2   Pages: 318-328   Published: JAN 19 2010

Delfosse V, Girard E, Birck C, et al.; Structure of the Archaeal Pab87 Peptidase Reveals a Novel Self-Compartmentalizing Protease Family ; PLOS ONE   Volume: 4   Issue: 3 Article Number: e4712   Published: MAR 5 2009

Hanzelmann P, Dahl JU, Kuper J, et al.; Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains PROTEIN SCIENCE   Volume: 18   Issue: 12   Pages: 2480-2491   Published: DEC 2009

Hennigan RF, Foster LA, Chaiken MF, et al.; Fluorescence Resonance Energy Transfer Analysis of Merlin Conformational Changes ; MOLECULAR AND CELLULAR BIOLOGY   Volume: 30   Issue: 1   Pages: 54-67   Published: JAN 2010

Yang J, Dogovski C, Hocking D, et al.; Bicarbonate-Mediated Stimulation of RegA, the Global Virulence Regulator from Citrobacter rodentium JOURNAL OF MOLECULAR BIOLOGY   Volume: 394   Issue: 4   Pages: 591-599   Published: DEC 11 2009

Rhodes DG, Bossio RE, Laue TM; DETERMINATION OF SIZE, MOLECULAR WEIGHT, AND PRESENCE OF SUBUNITS ; GUIDE TO PROTEIN PURIFICATION, SECOND EDITION  Book Series: Methods in Enzymology   Volume: 466   Pages: 691-723   Published: 2009

Gabrielson JP, Arthur KK, Stoner MR, et al.; Precision of protein aggregation measurements by sedimentation velocity analytical ultracentrifugation in biopharmaceutical applications ANALYTICAL BIOCHEMISTRY   Volume: 396   Issue: 2   Pages: 231-241   Published: JAN 15 2010  

Luo Y, Lu ZJ, Raso SW, et al.; Dimers and multimers of monoclonal IgGI exhibit higher in vitro binding affinities to Fc gamma receptors ; MABS   Volume: 1   Issue: 5   Pages: 491-504   Published: SEP-OCT 2009

Roth HM, Tessmer I, Van Houten B, et al.; Bax1 Is a Novel Endonuclease IMPLICATIONS FOR ARCHAEAL NUCLEOTIDE EXCISION REPAIR ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 47   Pages: 32272-32278   Published: NOV 20 2009

Solomon JP, Yonemoto IT, Murray AN, et al.; The 8 and 5 kDa Fragments of Plasma Gelsolin Form Amyloid Fibrils by a Nucleated Polymerization Mechanism, while the 68 kDa Fragment Is Not Amyloidogenic ; BIOCHEMISTRY   Volume: 48   Issue: 48   Pages: 11370-11380   Published: DEC 8 2009

Barton JL, Bunka DHJ, Knowling SE, et al.; Characterization of RNA aptamers that disrupt the RUNX1-CBF beta/DNA complex ; NUCLEIC ACIDS RESEARCH   Volume: 37   Issue: 20   Pages: 6818-6830   Published: NOV 2009

Mohammadi T, Ploeger GEJ, Verheul J, et al.; The GTPase Activity of Escherichia coli FtsZ Determines the Magnitude of the FtsZ Polymer Bundling by ZapA in Vitro; BIOCHEMISTRY   Volume: 48   Issue: 46   Pages: 11056-11066   Published: NOV 24 2009

Salter JD, Krucinska J, Raina J, et al.; A Hydrodynamic Analysis of APOBEC3G Reveals a Monomer-Dimer-Tetramer Self-Association That Has Implications for Anti-HIV Function BIOCHEMISTRY   Volume: 48   Issue: 45   Pages: 10685-10687   Published: NOV 17 2009

Zhang J, Li D, Liu G, et al. Lag Periods During the Self-Assembly of {Mo72Fe30} Macroions: Connection to the Virus Capsid Formation Process ; JOURNAL OF THE AMERICAN CHEMICAL SOCIETY   Volume: 131   Issue: 42   Pages: 15152-15159   Published: OCT 28 2009

Gibellini F, Hunter WN, Smith TK; The ethanolamine branch of the Kennedy pathway is essential in the bloodstream form of Trypanosoma brucei  ; MOLECULAR MICROBIOLOGY   Volume: 73   Issue: 5   Pages: 826-843   Published: SEP 2009

Duppatla V, Bodda C, Urbanke C, et al.; The C-terminal domain is sufficient for endonuclease activity of Neisseria gonorrhoeae MutL ; BIOCHEMICAL JOURNAL   Volume: 423   Pages: 265-277   Part: Part 2   Published: OCT 15 2009

Baumgartner R, Meder G, Briand C, et al.; The crystal structure of caspase-6, a selective effector of axonal degeneration ; BIOCHEMICAL JOURNAL   Volume: 423   Pages: 429-439   Part: Part 3   Published: NOV 1 2009

Li SW, Tang XH, Seetharaman J, et al.; Dimerization of Hepatitis E Virus Capsid Protein E2s Domain Is Essential for Virus-Host Interaction ; PLOS PATHOGENS   Volume: 5   Issue: 8 Article Number: e1000537   Published: AUG 2009

Saio T, Yokochi M, Inagaki F; The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappa B signaling pathway ; JOURNAL OF BIOMOLECULAR NMR   Volume: 45   Issue: 3   Pages: 335-341   Published: NOV 2009

Yuzawa S, Miyano K, Honbou K, et al.; The Domain Organization of p67(phox), a Protein Required for Activation of the Superoxide-Producing NADPH Oxidase in Phagocytes ; JOURNAL OF INNATE IMMUNITY   Volume: 1   Issue: 6   Pages: 543-555   Published: 2009

Cox R, Green TJ, Qiu SH, et al.; Characterization of a Mumps Virus Nucleocapsidlike Particle ; JOURNAL OF VIROLOGY   Volume: 83   Issue: 21   Pages: 11402-11406   Published: NOV 2009

Bonten EJ, Campos Y, Zaitsev V, et al.; Heterodimerization of the Sialidase NEU1 with the Chaperone Protective Protein/Cathepsin A Prevents Its Premature Oligomerization JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 41   Pages: 28430-28441   Published: OCT 9 2009

Pavlov GM, Amoros D, Ott C, et al.; Hydrodynamic Analysis of Well-Defined Flexible Linear Macromolecules of Low Molar Mass ; MACROMOLECULES   Volume: 42   Issue: 19   Pages: 7447-7455   Published: OCT 13 2009

Arthur KK, Gabrielson JP, Kendrick BS, et al.; Detection of Protein Aggregates by Sedimentation Velocity Analytical Ultracentrifugation (SV-AUC): Sources of Variability and Their Relative Importance ; JOURNAL OF PHARMACEUTICAL SCIENCES   Volume: 98   Issue: 10   Pages: 3522-3539   Published: OCT 2009

Costantino HR, Culley H, Chen L, et al.; Development of Calcitonin Salmon Nasal Spray: Similarity of Peptide Formulated in Chlorobutanol Compared to Benzalkonium Chloride as Preservative ; JOURNAL OF PHARMACEUTICAL SCIENCES   Volume: 98   Issue: 10   Pages: 3691-3706   Published: OCT 2009

Brown PH, Balbo A, Schuck P ; On the analysis of sedimentation velocity in the study of protein complexes ; EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS   Volume: 38   Issue: 8   Pages: 1079-1099   Published: OCT 2009

Shiga D, Nakane D, Inomata T, et al.; The Effect of the Side Chain Length of Asp and Glu on Coordination Structure of Cu2+ in a de novo Designed Protein; BIOPOLYMERS   Volume: 91   Issue: 11   Pages: 907-916   Published: NOV 2009

Sahin E, Kiick KL; Macromolecule-Induced Assembly of Coiled-Coils in Alternating Multiblock Polymers ; BIOMACROMOLECULES   Volume: 10   Issue: 10   Pages: 2740-2749   Published: OCT 2009

Su KL, Liao YF, Hung HC, et al.; Critical Factors Determining Dimerization of Human Antizyme Inhibitor ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 39   Pages: 26768-26777   Published: SEP 25 2009

Plassmeyer ML, Reiter K, Shimp RL, et al.; Structure of the Plasmodium falciparum Circumsporozoite Protein, a Leading Malaria Vaccine Candidate ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 39   Pages: 26951-26963   Published: SEP 25 2009

James KJ, Hancock MA, Gagnon JN, et al.; TonB Interacts with BtuF, the Escherichia coli Periplasmic Binding Protein for Cyanocobalamin ; BIOCHEMISTRY   Volume: 48   Issue: 39   Pages: 9212-9220   Published: OCT 6 2009

Hughes H, Morgan C, Brunyak E, et al.; A Multi-Tiered Analytical Approach For the Analysis and Quantitation of High-Molecular-Weight Aggregates in a Recombinant Therapeutic Glycoprotein ; AAPS JOURNAL   Volume: 11   Issue: 2   Pages: 335-341   Published: JUN 2009

Rochman M, Postnikov Y, Correll S, et al.; The Interaction of NSBP1/HMGN5 with Nucleosomes in Euchromatin Counteracts Linker Histone-Mediated Chromatin Compaction and Modulates Transcription ; MOLECULAR CELL   Volume: 35   Issue: 5   Pages: 642-656   Published: SEP 11 2009

Motshwene PG, Moncrieffe MC, Grossmann JG, et al.; An Oligomeric Signaling Platform Formed by the Toll-like Receptor Signal Transducers MyD88 and IRAK-4 ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 37   Pages: 25404-25411   Published: SEP 11 2009

Jones RPO, Wang MC, Jowitt TA, et al.; Fibulin 5 Forms a Compact Dimer in Physiological Solutions JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 38   Pages: 25938-25943   Published: SEP 18 2009

Luo ZL, Zhang GZ; Scaling for Sedimentation and Diffusion of Poly(ethylene glycol) in Water ; JOURNAL OF PHYSICAL CHEMISTRY B   Volume: 113   Issue: 37   Pages: 12462-12465   Published: SEP 17 2009

Campuzano S, Serra B, Llull D, et al.; Cloning, Expression, and Characterization of a Peculiar Choline-Binding beta-Galactosidase from Streptococcus mitis APPLIED AND ENVIRONMENTAL MICROBIOLOGY   Volume: 75   Issue: 18   Pages: 5972-5980   Published: SEP 15 2009

Mansilla-Soto J, Yoon-Robarts M, Rice WJ, et al.; DNA Structure Modulates the Oligomerization Properties of the AAV Initiator Protein Rep68 ; PLOS PATHOGENS   Volume: 5   Issue: 7 Article Number: e1000513   Published: JUL 2009

Lee JH, Maskos K, Huber R; Structural and Functional Studies of the Yeast Class II Hda1 Histone Deacetylase Complex ; JOURNAL OF MOLECULAR BIOLOGY   Volume: 391   Issue: 4   Pages: 744-757   Published: AUG 28 2009

Patel A, Dharmarajan V, Vought VE, et al.; On the Mechanism of Multiple Lysine Methylation by the Human Mixed Lineage Leukemia Protein-1 (MLL1) Core Complex ; JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 284   Issue: 36   Pages: 24242-24256   Published: SEP 4 2009

Huang CW, Tseng CC, Chen YH, et al.; Substitution of residues at the double dimer interface affects the stability and oligomerization of goose delta-crystallin FEBS JOURNAL   Volume: 276   Issue: 18   Pages: 5126-5136   Published: SEP 2009

Van Doorslaer K, Sidi AOMO, Zanier K, et al.; Identification of Unusual E6 and E7 Proteins within Avian Papillomaviruses: Cellular Localization, Biophysical Characterization, and Phylogenetic Analysis JOURNAL OF VIROLOGY   Volume: 83   Issue: 17   Pages: 8759-8770   Published: SEP 2009

Breyton C, Gabel F, Abla M, et al.; Micellar and Biochemical Properties of (Hemi)Fluorinated Surfactants Are Controlled by the Size of the Polar Head ; BIOPHYSICAL JOURNAL   Volume: 97   Issue: 4   Pages: 1077-1086   Published: AUG 19 2009

Bjornham O, Schedin S; Methods and estimations of uncertainties in single-molecule dynamic force spectroscopy ; EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS   Volume: 38   Issue: 7   Pages: 911-922   Published: SEP 2009

Jamison JA, Krueger KM, Mayo JT, et al.; Applying analytical ultracentrifugation to nanocrystal suspensions NANOTECHNOLOGY   Volume: 20   Issue: 35 Article Number: 355702   Published: SEP 2 2009

 

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Uncontrolled Zinc- and Copper-Induced Oligomerisation of the Human Complement Regulator Factor H and Its Possible Implications for Function and Disease
Journal of Molecular Biology, Volume 384, Issue 5, 31 December 2008, Pages 1341-1352
Ruodan Nan, Jayesh Gor, Imre Lengyel, Stephen J. Perkins

Specificity and Reactivity in Menaquinone Biosynthesis: The Structure of Escherichia coli MenD (2-Succinyl-5-Enolpyruvyl-6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase)
Journal of Molecular Biology, Volume 384, Issue 5, 31 December 2008, Pages 1353-1368
Alice Dawson, Paul K. Fyfe, William N. Hunter

Evidence for the Oligomeric State of ‘Elastic’ Titin in Muscle Sarcomeres
Journal of Molecular Biology, Volume 384, Issue 2, 12 December 2008, Pages 299-312
Ahmed Houmeida, Andy Baron, Jeff Keen, G Nasir Khan, Peter J. Knight, Walter F. Stafford III, Kavitha Thirumurugan, Beatrix Thompson, Larissa Tskhovrebova, John Trinick

The High-Resolution NMR Structure of the Early Folding Intermediate of the Thermus thermophilus Ribonuclease H
Journal of Molecular Biology, Volume 384, Issue 2, 12 December 2008, Pages 531-539
Zheng Zhou, Hanqiao Feng, Rodolfo Ghirlando, Yawen Bai

NUTS and BOLTS: Applications of fluorescence-detected sedimentation
Analytical Biochemistry, In Press, Uncorrected Proof, Available online 6 December 2008
Rachel R. Kroe, Thomas M. Laue

Helicobacter pylori neutrophil-activating protein promotes myeloperoxidase release from human neutrophils
Biochemical and Biophysical Research Communications, Volume 377, Issue 1, 5 December 2008, Pages 52-56
Chung-An Wang, Yen-Chun Liu, Shin-Yi Du, Chio-Wen Lin, Hua-Wen Fu

The family 52 β-xylosidase from Geobacillus stearothermophilus is a dimer: Structural and biophysical characterization of a glycoside hydrolase
Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, Volume 1784, Issue 12, December 2008, Pages 1924-1934
Lellys M. Contreras, Javier Gómez, Jesús Prieto, Josefa M. Clemente-Jiménez, Francisco J. Las Heras-Vázquez, Felipe Rodríguez-Vico, Francisco J. Blanco, José L. Neira

Macromolecular conformation of chitosan in dilute solution: A new global hydrodynamic approach
Carbohydrate Polymers, In Press, Corrected Proof, Available online 27 November 2008
Gordon A. Morris, Jonathan Castile, Alan Smith, Gary G. Adams, Stephen E. Harding

Interplay between DNA Polymerase and Proliferating Cell Nuclear Antigen Switches Off Base Excision Repair of Uracil and Hypoxanthine during Replication in Archaea
Journal of Molecular Biology, Volume 383, Issue 4, 21 November 2008, Pages 762-771
Kieran Emptage, Rory O'Neill, Alexandra Solovyova, Bernard A. Connolly

Crystal Structure of the Escherichia coli 23S rRNA:m5C Methyltransferase RlmI (YccW) Reveals Evolutionary Links between RNA Modification Enzymes
Journal of Molecular Biology, Volume 383, Issue 3, 14 November 2008, Pages 652-666
S. Sunita, Karolina L. Tkaczuk, Elzbieta Purta, Joanna M. Kasprzak, Stephen Douthwaite, Janusz M. Bujnicki, J. Sivaraman

Thermodynamic characterization of the palm tree Roystonea regia peroxidase stability
Biochimie, Volume 90, Issues 11-12, November-December 2008, Pages 1737-1749
Laura S. Zamorano, David G. Pina, Juan B. Arellano, Sergey A. Bursakov, Andrey P. Zhadan, Juan J. Calvete, Libia Sanz, Peter R. Nielsen, Enrique Villar, Olga Gavel, Manuel G. Roig, Leandra Watanabe, Igor Polikarpov, Valery L. Shnyrov

Effect of mutations mimicking phosphorylation on the structure and properties of human 14-3-3ζ
Archives of Biochemistry and Biophysics, Volume 477, Issue 2, 15 September 2008, Pages 305-312
Nikolai N. Sluchanko, Ivan S. Chernik, Alim S. Seit-Nebi, Anastasia V. Pivovarova, Dmitrii I. Levitsky, Nikolai B. Gusev

The SOCS Box Domain of SOCS3: Structure and Interaction with the ElonginBC-Cullin5 Ubiquitin Ligase
Journal of Molecular Biology, Volume 381, Issue 4, 12 September 2008, Pages 928-940
Jeffrey J. Babon, Jennifer K. Sabo, Alfreda Soetopo, Shenggen Yao, Michael F. Bailey, Jian-Guo Zhang, Nicos A. Nicola, Raymond S. Norton

The Crystal Structure of CHIR-AB1: A Primordial Avian Classical Fc Receptor
Journal of Molecular Biology, Volume 381, Issue 4, 12 September 2008, Pages 1012-1024
Tal I. Arnon, Jens T. Kaiser, Anthony P. West Jr, Rich Olson, Ron Diskin, Birgit C. Viertlboeck, Thomas W. Göbel, Pamela J. Bjorkman

Structural Basis of the Cytoplasmic Tail of Adhesion Molecule CD43 and Its Binding to ERM Proteins
Journal of Molecular Biology, Volume 381, Issue 3, 5 September 2008, Pages 634-644
Yumiko Takai, Ken Kitano, Shin-ichi Terawaki, Ryoko Maesaki, Toshio Hakoshima

Determining the concentration and the absorptivity factor at 260 nm in sodium dodecyl sulfate of the adenovirus reference material using analytical ultracentrifugation
Analytical Biochemistry, Volume 380, Issue 1, 1 September 2008, Pages 152-154
Steven A. Berkowitz

Residue 134 determines the dimer–tetramer assembly of nucleoside diphosphate kinase from moderately halophilic bacteria
FEBS Letters, Volume 582, Issue 7, 2 April 2008, Pages 1049-1054
Hiroko Tokunaga, Matsujiro Ishibashi, Fumio Arisaka, Shigeki Arai, Ryota Kuroki, Tsutomu Arakawa, Masao Tokunaga

The structure analysis of Humanin analog, AGA-(C8R)HNG17, by circular dichroism and sedimentation equilibrium: Comparison with the parent molecule
International Journal of Biological Macromolecules, Volume 43, Issue 2, 15 August 2008, Pages 88-93
Fumio Arisaka, Takako Niikura, Tsutomu Arakawa, Yoshiko Kita

Stathmin/Op18 is a novel mediator of vinblastine activity
FEBS Letters, Volume 582, Issue 17, 23 July 2008, Pages 2484-2488
Francois Devred, Philipp O. Tsvetkov, Pascale Barbier, Diane Allegro, Susan Band Horwitz, Alexander A. Makarov, Vincent Peyrot

The Solution Structure of the Simian Foamy Virus Protease Reveals a Monomeric Protein
Journal of Molecular Biology, Volume 381, Issue 1, 1 August 2008, Pages 141-149
Maximilian J. Hartl, Birgitta M. Wöhrl, Paul Rösch, Kristian Schweimer

Evolution of Quaternary Structure in a Homotetrameric Enzyme
Journal of Molecular Biology, Volume 380, Issue 4, 18 July 2008, Pages 691-703
Michael D.W. Griffin, Renwick C.J. Dobson, F. Grant Pearce, Laurence Antonio, Andrew E. Whitten, Chu K. Liew, Joel P. Mackay, Jill Trewhella, Geoffrey B. Jameson, Matthew A. Perugini, Juliet A. Gerrard

Molecular Structure and Metal-binding Properties of the Periplasmic CopK Protein Expressed in Cupriavidus metallidurans CH34 During Copper Challenge
Journal of Molecular Biology, Volume 380, Issue 2, 4 July 2008, Pages 386-403
Beate Bersch, Adrien Favier, Paul Schanda, Sébastien van Aelst, Tatiana Vallaeys, Jacques Covčs, Max Mergeay, Ruddy Wattiez

Role of tryptophan-208 residue in cytochrome c oxidation by ascorbate peroxidase from Leishmania major-kinetic studies on Trp208Phe mutant and wild type enzyme
Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, Volume 1784, Issue 5, May 2008, Pages 863-871
Rajesh K. Yadav, Subhankar Dolai, Swati Pal, Subrata Adak

Golgi Localization of Glycosyltransferases Requires a Vps74p Oligomer
Developmental Cell, Volume 14, Issue 4, 15 April 2008, Pages 523-534
Karl R. Schmitz, Jingxuan Liu, Shiqing Li, Thanuja Gangi Setty, Christopher S. Wood, Christopher G. Burd, Kathryn M. Ferguson

Structure and Dynamics of Ca2 +-Binding Domain 1 of the Na +/Ca2 + Exchanger in the Presence and in the Absence of Ca2 +
Journal of Molecular Biology, Volume 377, Issue 3, 28 March 2008, Pages 945-955
Eric Johnson, Lei Bruschweiler-Li, Scott A. Showalter, Geerten W. Vuister, Fengli Zhang, Rafael Brüschweiler

The dimeric assembly of Photobacterium leiognathi and Salmonella typhimurium SodC1 Cu,Zn superoxide dismutases is affected differently by active site demetallation and pH: An analytical ultracentrifuge study
Archives of Biochemistry and Biophysics, Volume 471, Issue 1, 1 March 2008, Pages 77-84
B. Catacchio, M. D’Orazio, A. Battistoni, E. Chiancone

Role of Intrinsic Flexibility in Signal Transduction Mediated by the Cell Cycle Regulator, p27Kip1
Journal of Molecular Biology, Volume 376, Issue 3, 22 February 2008, Pages 827-838
Charles A. Galea, Amanda Nourse, Yuefeng Wang, Sivashankar G. Sivakolundu, William T. Heller, Richard W. Kriwacki

HsdR Subunit of the Type I Restriction-Modification Enzyme EcoR124I: Biophysical Characterisation and Structural Modelling
Journal of Molecular Biology, Volume 376, Issue 2, 15 February 2008, Pages 438-452
Agnieszka Obarska-Kosinska, James E. Taylor, Philip Callow, Jerzy Orlowski, Janusz M. Bujnicki, G. Geoff Kneale

Comparative Analysis of Structural and Dynamic Properties of the Loaded and Unloaded Hemophore HasA: Functional Implications
Journal of Molecular Biology, Volume 376, Issue 2, 15 February 2008, Pages 517-525
Nicolas Wolff, Nadia Izadi-Pruneyre, Joël Couprie, Michael Habeck, Jens Linge, Wolfgang Rieping, Cécile Wandersman, Michael Nilges, Muriel Delepierre, Anne Lecroisey

tRNA-dependent asparagine formation in prokaryotes: Characterization, isolation and structural and functional analysis of a ribonucleoprotein particle generating Asn-tRNAAsn
Methods, Volume 44, Issue 2, February 2008, Pages 146-163
Marc Bailly, Mickaël Blaise, Hervé Roy, Marzanna Deniziak, Bernard Lorber, Catherine Birck, Hubert D. Becker, Daniel Kern

Assembly of Oligomeric Death Domain Complexes during Toll Receptor Signaling
 :Moncrieffe MC, Grossmann JG, Gay NJ :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 48   Pages: 33447-33454   Published: NOV 28 2008

Intrinsically Unstructured Domains of Arf and Hdm2 Form Bimolecular Oligomeric Structures In Vitro and In Vivo
 :Sivakolundu SG, Nourse A, Moshiach S, et al. :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 384   Issue: 1   Pages: 240-254   Published: DEC 5 2008

Structure and function of 2 : 1 DNA polymerase-DNA complexes
 :Tang KH, Tsai MD :  JOURNAL OF CELLULAR PHYSIOLOGY   Volume: 216   Issue: 2   Pages: 315-320   Published: AUG 2008

Cutting edge structural protein from the jaws of Nereis virens
 :Broomell CC, Chase SF, Laue T, et al. :  BIOMACROMOLECULES   Volume: 9   Issue: 6   Pages: 1669-1677   Published: JUN 2008

Self-association of phosphorylase kinase from rabbit skeletal muscles under conditions close to those of an intracellular environment
 :Merem'yanin AV, Chebotareva NA, Makeeva VF, et al. :  DOKLADY BIOCHEMISTRY AND BIOPHYSICS   Volume: 415   Issue: 1   Pages: 183-185   Published: AUG 2007

Cooperative self-association of phosphorylase kinase from rabbit skeletal muscle
 :Chebotareva NA, Mererayanin AV, Makeeva VF, et al. :  BIOPHYSICAL CHEMISTRY   Volume: 133   Issue: 1-3   Pages: 45-53   Published: MAR 2008

Assembly of the oncogenic DNA-binding complex LMO2 center dot Ldb1 center dot TAL1 center dot E12
 :Ryan DP, Duncan JL, Lee C, et al. :  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS   Volume: 70   Issue: 4   Pages: 1461-1474   Published: MAR 2008

AMP-activated protein kinase subunit interactions - beta 1 :gamma 1 association requires beta 1 Thr-263 and Tyr-267
 :Iseli TJ, Oakhill JS, Bailey MF, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 8   Pages: 4799-4807   Published: FEB 22 2008

Kinetics of thermal aggregation of glycogen phosphorylase b from rabbit preprints online within skeletal muscle: Mechanism of protective action of alpha-crystallin
 :Meremyanin AV, Eronina TB, Chebotareva NA, et al. :  BIOPOLYMERS   Volume: 89   Issue: 2   Pages: 124-134   Published: FEB 2008

Structure and functional analysis of the IGF-II/IGF2R interaction
 :Brown J, Delaine C, Zaccheo OJ, et al. :  EMBO JOURNAL   Volume: 27   Issue: 1   Pages: 265-276   Published: JAN 9 2008

Thermal aggregation of alpha-chymotrypsin: Role of hydrophobic and electrostatic interactions
 :Rezaei-Ghaleh N, Ramshini H, Ebrahim-Habibi A, et al. :  BIOPHYSICAL CHEMISTRY   Volume: 132   Issue: 1   Pages: 23-32   Published: JAN 2008

Yajie Zhang, Hyunju Oh, Robert A. Burton, John W. Burgner, Robert L. Geahlen, and Carol Beth Post. Tyr130 phosphorylation triggers Syk release from antigen receptor by long-distance conformational uncoupling. PNAS 2008 105:11760-11765; doi:10.1073/pnas.0708583105

Deborah G. Conrady, Cristin C. Brescia, Katsunori Horii, Alison A. Weiss, Daniel J. Hassett, and Andrew B. Herr. A zinc-dependent adhesion module is responsible for intercellular adhesion in staphylococcal biofilmsPNAS 2008 105:19456-19461; doi:10.1073/pnas.0807717105

Atanu Maiti, Michael T. Morgan, Edwin Pozharski, and Alexander C. Drohat. Crystal structure of human thymine DNA glycosylase bound to DNA elucidates sequence-specific mismatch recognitionPNAS 2008 105:8890-8895; doi:10.1073/pnas.0711061105

Andrew Derome, Christian Hoischen, Malte Bussiek, Ruth Grady, Malgorzata Adamczyk, Barbara Kęedzierska, Stephan Diekmann, Daniela Barillŕ, and Finbarr Hayes. Centromere anatomy in the multidrug-resistant pathogen Enterococcus faeciumPNAS 2008 105:2151-2156; doi:10.1073/pnas.0704681105

Masahiro Watanabe, Jonathan G. Heddle, Kenichi Kikuchi, Satoru Unzai, Satoko Akashi, Sam-Yong Park, and Jeremy R. H. Tame. The nature of the TRAP–Anti-TRAP complexPNAS 2009 106:2176-2181; doi:10.1073/pnas.0801032106

Nikola Wenta, Holger Strauss, Stefanie Meyer, and Uwe Vinkemeier. Tyrosine phosphorylation regulates the partitioning of STAT1 between different dimer conformationsPNAS 2008 105:9238-9243; doi:10.1073/pnas.0802130105

Fluorescence Detection of a Lipid-induced Tetrameric Intermediate in Amyloid Fibril Formation by Apolipoprotein C-II
 :Ryan TM, Howlett GJ, Bailey MF :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 50   Pages: 35118-35128   Published: DEC 12 2008

Solution Structure of the Complex Formed between Human Complement C3d and Full-length Complement Receptor Type 2
 :Li KY, Okemefuna AI, Gor J, et al. :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 384   Issue: 1   Pages: 137-150   Published: DEC 5 2008

Observation of contraction and expansion in a bis(peptide)-based mechanical molecular actuator
 :Schafmeister CE, Belasco LG, Brown PH :  CHEMISTRY-A EUROPEAN JOURNAL   Volume: 14   Issue: 21   Pages: 6406-6412   Published: 2008

Kinetic partitioning between alternative protein-protein interactions controls a transcriptional switch
 :Zhao HY, Beckett D :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 380   Issue: 1   Pages: 223-236   Published: JUN 27 2008

Chemically induced dimerization of human nonpancreatic secretory phospholipase A2 by bis-indole derivatives
 :Zhou L, Fang C, Wei P, et al. :  JOURNAL OF MEDICINAL CHEMISTRY   Volume: 51   Issue: 12   Pages: 3360-3366   Published: JUN 26 2008

Structural basis and binding properties of the second bromodomain of Brd4 with acetylated histone tails
 :Liu Y, Wang XQ, Zhang JH, et al. :  BIOCHEMISTRY   Volume: 47   Issue: 24   Pages: 6403-6417   Published: JUN 17 2008

The modulation of transthyretin tetramer stability by cysteine 10 adducts and the drug diflunisal - Direct analysis by fluorescence-detected analytical ultracentrifugation
 :Kingsbury JS, Laue TM, Klimtchuk ES, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 18   Pages: 11887-11896   Published: MAY 2 2008

Domain stabilities in protein kinase R (PKR): Evidence for weak interdomain interactions
 :Anderson E, Cole JL :  BIOCHEMISTRY   Volume: 47   Issue: 17   Pages: 4887-4897   Published:
APR 29 2008

The GTPase cycle of the chloroplast import receptors Toc33/Toc34: Implications from monomeric and dimeric structures  :Koenig P, Oreb M, Hofle A, et al. :  STRUCTURE   Volume: 16   Issue: 4   Pages: 585-596   Published: APR 2008

Changes at the KinA PAS-A dimerization interface influence histidine kinase function
 :Lee J, Tomchick DR, Brautigam CA, et al. :  BIOCHEMISTRY   Volume: 47   Issue: 13   Pages: 4051-4064   Published: APR 1 2008

Characterization of the neuron-specific L1-CAM cytoplasmic tail: Naturally disordered in solution. It exercises different binding modes for different adaptor proteins
 :Tyukhtenko S, Deshmukh L, Kumar V, et al. :  BIOCHEMISTRY   Volume: 47   Issue: 13   Pages: 4160-4168   Published: APR 1 2008

Correlation between dissociation and catalysis of SARS-CoV main protease
 :Lin PY, Chou CY, Chang HC, et al. :  ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS   Volume: 472   Issue: 1   Pages: 34-42   Published: APR 1 2008

Visualization of transient ultra-weak protein self-association in solution using paramagnetic relaxation enhancement :Tang C, Ghirlando R, Clore GM :  JOURNAL OF THE AMERICAN CHEMICAL SOCIETY   Volume: 130   Issue: 12   Pages: 4048-4056   Published: MAR 26 2008

Solution structures of 2 : 1 and 1 : 1 DNA polymerase - DNA complexes probed by ultracentrifugation and small-angle X-ray scattering
 :Tang KH, Niebuhr M, Aulabaugh A, et al. :  NUCLEIC ACIDS RESEARCH   Volume: 36   Issue: 3   Pages: 849-860   Published: FEB 2008

Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G
 :Chen KM, Harjes E, Gross PJ, et al. :  NATURE   Volume: 452   Issue: 7183   Pages: 116-U16   Published: MAR 6 2008

Domain architecture and biochemical characterization of vertebrate Mcm10
 :Robertson PD, Warren EM, Zhang H, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 6   Pages: 3338-3348   Published: FEB 8 2008

Solution NMR characterizations of oligomerization and dynamics of equine infectious anemia virus matrix protein and its interaction with PIP2
 :Chen K, Bachtair I, Piszczek G, et al. :  BIOCHEMISTRY   Volume: 47   Issue: 7   Pages: 1928-1937   Published: FEB 19 2008

pyr RNA binding to the Bacillus caldolyticus PyrR attenuation protein - characterization and regulation by uridine and guanosine nucleotides
 :Jorgensen CM, Fields CJ, Chander P, et al. :  FEBS JOURNAL   Volume: 275   Issue: 4   Pages: 655-670   Published: FEB 2008

An investigation into the native-like properties of de novo designed cavitand-based four-helix bundle proteins
 :Huttunen-Hennelly HEK, Sherman JC :  BIOPOLYMERS   Volume: 90   Issue: 1   Pages: 37-50   Published: 2008

The regulatory SCR-1/5 and cell surface-binding SCR-16/20 fragments of factor H reveal partially folded-back solution structures and different self-associative properties
 :Okemefuna AI, Gilbert HE, Griggs KM, et al. :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 375   Issue: 1   Pages: 80-101   Published: JAN 4 2008

Molecular flexibility of citrus pectins by combined sedimentation and viscosity analysis
 :Morris GA, de al Torre JG, Ortega A, et al. :  FOOD HYDROCOLLOIDS   Volume: 22   Issue: 8   Pages: 1435-1442   Published: DEC 2008

Crystal structure of the GAF-B domain from human phosphodiesterase 10A complexed with its ligand, cAMP
 :Handa N, Mizohata E, Kishishita S, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 28   DOI: 10.1074/jbc.M800595200   Published: JUL 11 2008

Solution conformation, backbone dynamics and lipid interactions of the intrinsically unstructured malaria surface protein MSP2
 :Zhang XC, Perugini MA, Yao S, et al. :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 379   Issue: 1   Pages: 105-121   Published: MAY 23 2008

Structure-activity relationships of wheat flavone O-methyltransferase - a homodimer of convenience
 :Kornblatt JA, Zhou JM, Ibrahim RK :  FEBS JOURNAL   Volume: 275   Issue: 9   Pages: 2255-2266   Published: MAY 2008

Implications of the progressive self-association of wild-type human factor H6 for complement regulation and disease
 :Nan RD, Gor J, Perkins SJ :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 375   Issue: 4   Pages: 891-900   Published: JAN 25 2008

Specific ion influences on self-association of pyruvate dehydrogenase kinase isoform 2 (PDHK2), binding of PDHK2 to the L2 lipoyl domain, and effects of the lipoyl group-binding site inhibitor, Nov3r
 :Hiromasa Y, Yan XH, Roche TE :  BIOCHEMISTRY   Volume: 47   Issue: 8   Pages: 2312-2324   Published: FEB 26 2008

Unconventional methyl galactan synthesized via the thexyldimethylsilyl intermediate: Preparation, characterization, and properties
 :Koschella A, Inngjerdingen K, Paulsen BS, et al. :  MACROMOLECULAR BIOSCIENCE   Volume: 8   Issue: 1   Pages: 96-105   Published: JAN 9 2008

Extended polypeptide linkers establish the spatial architecture of a pyruvate dehydrogenase multienzyme complex
 :Lengyel JS, Stott KM, Wu XW, et al. :  STRUCTURE   Volume: 16   Issue: 1   Pages: 93-103   Published: JAN 2008

The partly folded back solution structure arrangement of the 30 SCR domains in human complement receptor type 1 (CR1) permits access to its C3b and C4b ligands
 :Furtado PB, Huang CY, Ihyembe D, et al. :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 375   Issue: 1   Pages: 102-118   Published: JAN 4 2008

Multiple global conformational states of the hexameric RepA helicase of plasmid RSF1010 with different ssDNA-Binding capabilities are induced by different numbers of bound nucleotides. Analytical ultracentrifugation and dynamic light scattering studies
 :Marcinowicz A, Jezewska MJ, Bujalowski W :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 375   Issue: 2   Pages: 386-408   Published: JAN 11 2008

Molar mass and solution conformation of branched alpha(1 -> 4), alpha(1 -> 6) Glucans. Part I: Glycogens in water
 :Morris GA, Ang S, Hill SE, et al. :  CARBOHYDRATE POLYMERS   Volume: 71   Issue: 1   Pages: 101-108   Published: JAN 5 2008

Gel chromatography and analytical ultracentrifugation to determine the extent of detergent binding and aggregation, and Stokes radius of membrane proteins using sarcoplasmic reticulum Ca2+–ATPase as an example Marc le Maire, Bertrand Arnou, Claus Olesen, Dominique Georgin, Christine Ebel, Jesper V Møller, Nature Protocols 3, 1782 - 1795 (01 Oct 2008), doi: 10.1038/nprot.2008.177, Protocols

The mode of Hedgehog binding to Ihog homologues is not conserved across different phyla Jason S. McLellan, Xiaoyan Zheng, Glenn Hauk, Rodolfo Ghirlando, Philip A. Beachy, Daniel J. Leahy. Nature 455, 979 - 983 (14 Sep 2008), doi: 10.1038/nature07358, Letter

Crystal structure of the neurotrophin-3 and p75: NTR: symmetrical complex Yong Gong, Peng Cao, Hong-jun Yu, Tao Jiang, Nature 454, 789 - 793 (02 Jul 2008), doi: 10.1038/nature07089, Letter

Vaccinia virus anti-apoptotic F1L is a novel Bcl-2-like domain-swapped dimer that binds a highly selective subset of BH3-containing death ligands M Kvansakul, H Yang, W D Fairlie, P E Czabotar, S F Fischer, M A Perugini, D C S Huang, P M Colman, Cell Death and Differentiation 15, 1564 - 1571 (13 Jun 2008), doi: 10.1038/cdd.2008.83, Original Paper

The bacterial flagellar switch complex is getting more complex Galit N Cohen-Ben-Lulu, Noreen R Francis, Eyal Shimoni, Dror Noy, Yaacov Davidov, Krishna Prasad, Yael Sagi, Gary Cecchini, Rose M Johnstone, Michael Eisenbach, The EMBO Journal 27, 1134 - 1144 (09 Apr 2008), doi: 10.1038/emboj.2008.48, Article

Discovery and characterization of a marine bacterial SAM-dependent chlorinase Alessandra S Eustáquio, Florence Pojer, Joseph P Noel, Bradley S Moore Nature Chemical Biology 4, 69 - 74 (01 Jan 2008), doi: 10.1038/nchembio.2007.56, Article

Activation segment dimerization: a mechanism for kinase autophosphorylation of non-consensus sites Ashley C W Pike, Peter Rellos, Frank H Niesen, Andrew Turnbull, Antony W Oliver, Sirlester A Parker, Benjamin E Turk, Laurence H Pearl, Stefan Knapp, The EMBO Journal 27, 704 - 714 (20 Feb 2008), doi: 10.1038/emboj.2008.8, Article

Crystal structure of human XLF/Cernunnos reveals unexpected differences from XRCC4 with implications for NHEJ Yi Li, Dimitri Y Chirgadze, Victor M Bolanos-Garcia, Bancinyane L Sibanda, Owen R Davies, Peter Ahnesorg, Stephen P Jackson, Tom L Blundell The EMBO Journal 27, 290 - 300 (09 Jan 2008), doi: 10.1038/sj.emboj.7601942, Article

A Fence-like Coat for the Nuclear Pore Membrane Erik W. Debler, Yingli Ma, Hyuk-Soo Seo, Kuo-Chiang Hsia, Thomas R. Noriega, Günter Blobel, André Hoelz 26 December 2008 Molecular Cell
32(6) pp. 815 - 826

Structural Basis for Calcium Sensing by GCaMP2 Qi Wang, Bo Shui, Michael I. Kotlikoff, Holger Sondermann 12 December 2008 Structure 16(12) pp. 1817 - 1827 0

Hierarchical Regulation of WASP/WAVE Proteins Shae B. Padrick, Hui-Chun Cheng, Ayman M. Ismail, Sanjay C. Panchal, Lynda K. Doolittle, Soyeon Kim, Brian M. Skehan, Junko Umetani, Chad A. Brautigam, John M. Leong et al. 7 November 2008 Molecular Cell, 32(3) pp. 426 - 438 0

Characterization of the Control Catabolite Protein of Gluconeogenic Genes Repressor by Fluorescence Cross-Correlation Spectroscopy and Other Biophysical Approaches Silvia Zorrilla, Álvaro Ortega, Denis Chaix, Carlos Alfonso, Germán Rivas, Stéphane Aymerich, M. Pilar Lillo, Nathalie Declerck, Catherine A. Royer 1 November 2008 Biophysical Journal 95(9) pp. 4403 - 4415

Biophysical Characterization of the Unstructured Cytoplasmic Domain of the Human Neuronal Adhesion Protein Neuroligin 3 Aviv Paz, Tzviya Zeev-Ben-Mordehai, Martin Lundqvist, Eilon Sherman, Efstratios Mylonas, Lev Weiner, Gilad Haran, Dmitri I. Svergun, Frans A.A. Mulder, Joel L. Sussman et al. 15 August 2008 Biophysical Journal 95(4) pp. 1928 - 1944

Tetrameric Structure of a Serine Integrase Catalytic Domain Peng Yuan, Kushol Gupta, Gregory D. Van Duyne 6 August 2008 Structure 16(8) pp. 1275 - 1286

Structural Basis for Dimerization in DNA Recognition by Gal4 Manqing Hong, Mary X. Fitzgerald, Sandy Harper, Cheng Luo, David W. Speicher, Ronen Marmorstein 9 July 2008 Structure 16(7) pp. 1019 - 1026

Dynamics of surfactant-suspended single-walled carbon nanotubes in a centrifugal field
 :Nair N, Kim WJ, Braatz RD, et al. :  LANGMUIR   Volume: 24   Issue: 5   Pages: 1790-1795   Published: MAR 4 2008

Quaternary Structural Transitions in the DeoR-Type Repressor UlaR Control Transcriptional Readout from the L-Ascorbate Utilization Regulon in Escherichia coli
 :Garces F, Fernandez FJ, Gomez AM, et al. :  BIOCHEMISTRY   Volume: 47   Issue: 44   Pages: 11424-11433   Published: NOV 4 2008

Chk2 Oligomerization Studied by Phosphopeptide Ligation IMPLICATIONS FOR REGULATION AND PHOSPHODEPENDENT INTERACTIONS
 :Li J, Taylor IA, Lloyd J, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 51   Pages: 36019-36030   Published: DEC 19 2008

Conserved Central Domains Control the Quaternary Structure of Type I and Type II Hsp40 Molecular Chaperones
 :Ramos CHI, Oliveira CLP, Fan CY, et al. :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 383   Issue: 1   Pages: 155-166   Published: OCT 31 2008

Human regulatory protein Ki-1/57 has characteristics of an intrinsically unstructured protein
 :Bressan GC, Silva JC, Borges JC, et al. :  JOURNAL OF PROTEOME RESEARCH   Volume: 7   Issue: 10   Pages: 4465-4474   Published: OCT 2008

Structural basis for multimeric heme complexation through a specific protein-heme interaction - The case of the third neat domain of IsdH from Staphylococcus aureus
 :Watanabe M, Tanaka Y, Suenaga A, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 42   Pages: 28649-28659   Published: OCT 17 2008

Heparan sulfate regulates fibrillin-1 N- and C-terminal interactions
 :Cain SA, Baldwin AK, Mahalingam Y, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 40   Pages: 27017-27027   Published: OCT 3 2008

Structural studies of prephenate dehydratase from Mycobacterium tuberculosis H37Rv by SAXS, ultracentrifugation, and computational analysis
 :Vivan AL, Caceres RA, Abrego JRB, et al. :  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS   Volume: 72   Issue: 4   Pages: 1352-1362   Published: SEP 2008

Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75
 :Berndsen CE, Tsubota T, Lindner SE, et al. :  NATURE STRUCTURAL & MOLECULAR BIOLOGY   Volume: 15   Issue: 9   Pages: 948-956   Published: SEP 2008

Divalent ion binding properties of the timothy grass allergen, Phl p 7
 :Henzl MT, Davis ME, Tan A :  BIOCHEMISTRY   Volume: 47   Issue: 30   Pages: 7846-7856   Published: JUL 29 2008

Thermodynamic characterization of nucleoplasmin unfolding: Interplay between function and stability
 :Franco G, Banuelos S, Falces J, et al. :  BIOCHEMISTRY   Volume: 47   Issue: 30   Pages: 7954-7962   Published: JUL 29 2008

Analysis of the Staphylococcus aureus DgkB structure reveals a common catalytic mechanism for the soluble diacylglycerol kinases
 :Miller DJ, Jerga A, Rock CO, et al. :  STRUCTURE   Volume: 16   Issue: 7   Pages: 1036-1046   Published: JUL 2008

Structural properties of the human respiratory syncytial virus P protein: Evidence for an elongated homotetrameric molecule that is the smallest orthologue within the family of paramyxovirus polymerase cofactors
 :Llorente MT, Taylor IA, Lopez-Vinas E, et al. :  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS   Volume: 72   Issue: 3   Pages: 946-958   Published: AUG 15 2008

Intrinsically disordered human C/EBP homologous protein regulates biological activity of colon cancer cells during calcium stress
 :Singh VK, Pacheco I, Uversky VN, et al. :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 380   Issue: 2   Pages: 313-326   Published: JUL 4 2008

Insights into the oligomerization state-helicase activity relationship of West Nile virus NS3NTPase/helicase
 :Feito MJ, Gomez-Gutierrez J, Ayora S, et al. :  VIRUS RESEARCH   Volume: 135   Issue: 1   Pages: 166-174   Published: JUL 2008

Interaction and stoichiometry of the peripheral stalk subunits NtpE and NtpF and the N-terminal hydrophilic domain of NtpI of Enterococcus hirae V-ATPase
 :Yamamoto M, Unzai S, Saijo S, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 28   DOI: 10.1074/jbc.M801772200   Published: JUL 11 2008

Biomolecular analysis of elastic fibre molecules
 :Cain SA, Raynal B, Hodson N, et al. :  METHODS   Volume: 45   Issue: 1   Pages: 42-52   Published: MAY 2008

ORF334 in Vibrio phage KVP40 plays the role of gp27 in T4 phage to form a heterohexameric complex
 :Nemoto M, Mio K, Kanamaru S, et al. :  JOURNAL OF BACTERIOLOGY   Volume: 190   Issue: 10   Pages: 3606-3612   Published: MAY 2008

Characterization and stabilization of solubilized membrane proteins
 :Ebel C :  BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT   Volume: 22   Issue: 1   Pages: 620-624   Published: FEB 2008

Human serum albumin (HSA) nanoparticles: Reproducibility of preparation process and kinetics of enzymatic degradation
 :Langer K, Anhorn MG, Steinhauser I, et al. :  INTERNATIONAL JOURNAL OF PHARMACEUTICS   Volume: 347   Issue: 1-2   Pages: 109-117   Published: JAN 22 2008

C-terminal, endoplasmic reticulum-lumenal domain of prosurfactant protein C - structural features and membrane interactions
 :Casals C, Johansson H, Saenz A, et al. :  FEBS JOURNAL   Volume: 275   Issue: 3   Pages: 536-547   Published: FEB 2008

Assembly of the mitochondrial Tim9-Tim10 complex: A multi-step reaction with novel intermediates
 :Ivanova E, Jowitt TA, Lu H :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 375   Issue: 1   Pages: 229-239   Published: JAN 4 2008

Molecular Flexibility of Methylcelluloses of Differing Degree of Substitution by Combined Sedimentation and Viscosity Analysis
 :Patel TR, Morris GA, de la Torre JG, et al. :  MACROMOLECULAR BIOSCIENCE   Volume: 8   Issue: 12   Pages: 1108-1115   Published: DEC 8 2008

Amalgam, an axon guidance Drosophila adhesion protein belonging to the immunoglobulin superfamily: Over-expression, purification and biophysical characterization
 :Zeev-Ben-Mordehai T, Paz A, Peleg Y, et al. :  PROTEIN EXPRESSION AND PURIFICATION   Volume: 63   Issue: 2   Pages: 147-157   Published: FEB 2009

Pectic polysaccharides from Biophytum petersianum Klotzsch, and their activation of macrophages and dendritic cells
 :Inngjerdingen M, Inngjerdingen KT, Patel TR, et al. :  GLYCOBIOLOGY   Volume: 18   Issue: 12   Pages: 1074-1084   Published: DEC 2008

Global conformation analysis of irradiated xyloglucans
 :Patel TR, Morris GA, Ebringerova A, et al. :  CARBOHYDRATE POLYMERS   Volume: 74   Issue: 4   Pages: 845-851   Published: NOV 21 2008

Methionine oxidation inhibits assembly and promotes disassembly of apolipoprotein C-II amyloid fibrils
 :Binger KJ, Griffin MDW, Howlett GJ :  BIOCHEMISTRY   Volume: 47   Issue: 38   Pages: 10208-10217   Published: SEP 23 2008

Using alpha-helical coiled-coils to design nanostructured metalloporphyrin arrays
 :McAllister KA, Zou HL, Cochran FV, et al. :  JOURNAL OF THE AMERICAN CHEMICAL SOCIETY   Volume: 130   Issue: 36   Pages: 11921-11927   Published: SEP 10 2008

Peptidoglycan recognition protein-SD provides versatility of receptor formation in Drosophila immunity
 :Wang L, Gilbert RJC, Atilano ML, et al. :  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   Volume: 105   Issue: 33   Pages: 11881-11886   Published:
AUG 19 2008

Modulation of microtubule assembly by the HIV-1 Tat protein is strongly dependent on zinc binding to Tat
 :Egele C, Barbier P, Didier P, et al. :  RETROVIROLOGY   Volume: 5 Article Number: 62   Published:
JUL 9 2008

Stathmin/Op18 is a novel mediator of vinblastine activity
 :Devred F, Tsvetkov PO, Barbier P, et al. :  FEBS LETTERS   Volume: 582   Issue: 17   Pages: 2484-2488   Published: JUL 23 2008

Crystal structure of Sulfolobus acidocaldarius aspartate carbamoyltransferase in complex with its allosteric activator CTP
 :De Vos D, Xu Y, Aerts T, et al. :  BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   Volume: 372   Issue: 1   Pages: 40-44   Published: JUL 18 2008

Modulation of self-association and subsequent fibril formaton in an alanine-rich helical polypeptide
 :Top A, Kiick KL, Roberts CJ :  BIOMACROMOLECULES   Volume: 9   Issue: 6   Pages: 1595-1603   Published: JUN 2008

The redox switch of gamma-glutamylcysteine ligase via a reversible monomer-dimer transition is a mechanism unique to plants
 :Gromes R, Hothorn M, Lenherr ED, et al. :  PLANT JOURNAL   Volume: 54   Issue: 6   Pages: 1063-1075   Published: JUN 2008

Apolipoprotein C-II amyloid fibrils assemble via a reversible pathway that includes fibril breaking and rejoining
 :Binger KJ, Pham CLL, Wilson LM, et al. :  JOURNAL OF MOLECULAR BIOLOGY   Volume: 376   Issue: 4   Pages: 1116-1129   Published: FEB 29 2008

Characterization of the N-acetyl-5-neuraminic acid-binding site of the extracytoplasmic solute receptor (SiaP) of nontypeable Haemophilus influenzae strain 2019
 :Johnston JW, Coussens NP, Allen S, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 2   Pages: 855-865   Published: JAN 11 2008

A Conserved Arginine-containing Motif Crucial for the Assembly and Enzymatic Activity of the Mixed Lineage Leukemia Protein-1 Core Complex
 :Patel A, Vought VE, Dharmarajan V, et al. :  JOURNAL OF BIOLOGICAL CHEMISTRY   Volume: 283   Issue: 47   Pages: 32162-32175   Published: NOV 21 2008

Studies of the structure of multiferric ion-bound lactoferrin: A new antianemic edible material
 :Hu FY, Pan FG, Sawano Y, et al. :  INTERNATIONAL DAIRY JOURNAL   Volume: 18   Issue: 10-11   Pages: 1051-1056   Published: OCT-NOV 2008

Biophysical analysis of Thermus aquaticus single-stranded DNA binding protein
 :Witte G, Fedorov R, Curth U :  BIOPHYSICAL JOURNAL   Volume: 94   Issue: 6   Pages: 2269-2279   Published: MAR 15 2008

Two interferons alpha influence each other during their interaction with the extracellular domain of human type interferon receptor subunit 2
 :Schmeisser H, Gorshkova I, Brown PH, et al. :  BIOCHEMISTRY   Volume: 46   Issue: 50   Pages: 14638-14649   Published: DEC 18 2007

Obarska-Kosinska A, Taylor JE, Callow P, Orlowski J, Bujnicki JM, Kneale GG.
HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling.
J Mol Biol. 2008 Feb 15;376(2):438-52.

Y. Gohon, T. Dahmane, R.W.H. Ruigrok, P. Schuck, D. Charvolin, F. Rappaport, P. Timmins, D.M. Engelman, C. Tribet, J.-L. Popot, C. Ebel. (2008) Bacteriorhotopsin/amphipol complexes: structural and functional properties.  Biophysical Journal (Epub) 

Alexandra Bonner, Patricia B. Furtado, Adel Almogren, Michael A. Kerr, and Stephen J. Perkins
Implications of the Near-Planar Solution Structure of Human Myeloma Dimeric IgA1 for Mucosal Immunity and IgA Nephropathy
J. Immunol., Jan 2008; 180: 1008 - 1018.


Xin Zhang, Todd J. Green, Jun Tsao, Shihong Qiu, and Ming Luo
Role of Intermolecular Interactions of Vesicular Stomatitis Virus Nucleoprotein in RNA Encapsidation
J. Virol., Jan 2008; 82: 674 - 682.

Renata Grzela, Ewa Szolajska, Christine Ebel, Dominique Madern, Adrien Favier, Izabela Wojtal, Wlodzimierz Zagorski, and Jadwiga Chroboczek
Virulence Factor of Potato Virus Y, Genome-attached Terminal Protein VPg, Is a Highly Disordered Protein
J. Biol. Chem., Jan 2008; 283: 213 - 221.

Christine R. Schar, Grant E. Blouse, Kenneth H. Minor, and Cynthia B. Peterson
A deletion mutant of vitronectin lacking the somatomedin B domain exhibits residual pai-1-binding activity
J. Biol. Chem., Jan 2008; doi:10.1074/jbc.M708017200

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Alexandra Bonner, Clémentine Perrier, Blaise Corthésy, and Stephen J. Perkins
Solution Structure of Human Secretory Component and Implications for Biological Function
J. Biol. Chem., Jun 2007; 282: 16969 - 16980.

Deborah F. Kelly, Robert J. Lake, Thomas Walz, and Spyros Artavanis-Tsakonas
Conformational variability of the intracellular domain of Drosophila Notch and its interaction with Suppressor of Hairless
PNAS, Jun 2007; 104: 9591 - 9596.

Reuven Wiener, Yoni Haitin, Liora Shamgar, M Carmen Fernandez-Alonso, Ariadna Martos, Orna Chomsky-Hecht, German Rivas, Bernard Attali, and Joel A. Hirsch
The KCNQ1 (Kv7.1) C-terminus, a multi-tieredscaffold for subunit assembly and protein interaction

Yasuyuki Matsuda, Takumi Koshiba, Tsukasa Osaki, Haruka Suyama, Fumio Arisaka, Yoshihiro Toh, and Shun-ichiro Kawabata
An Arthropod Cuticular Chitin-binding Protein Endows Injured Sites with Transglutaminase-dependent Mesh
J. Biol. Chem., Dec 2007; 282: 37316 - 37324.

Kuo-Hsiang Tang, Marc Niebuhr, Ann Aulabaugh, and Ming-Daw Tsai
Solution structures of 2 : 1 and 1 : 1 DNA polymerase–DNA complexes probed by ultracentrifugation and small-angle X-ray scattering
Nucleic Acids Res., Dec 2007; doi:10.1093/nar/gkm1101

Tristan J. Iseli, Jonathan S. Oakhill, Michael F. Bailey, Sheena Wee, Mark Walter, Bryce J. van Denderen, Laura A. Castelli, Frosa Katsis, Lee A. Witters, David Stapleton, Lance Macauley, Belinda J. Michell, and Bruce E. Kemp
AMPK subunit interactions; beta 1:gamma 1 association requires beta 1 THR-263 and TYR-267
J. Biol. Chem., Dec 2007; doi:10.1074/jbc.M708298200

Gregor Witte, Roman Fedorov, and Ute Curth
Biophysical analysis of Thermus aquaticus single-stranded DNA binding protein
Biophys. J., Dec 2007; doi:10.1529/biophysj.107.121533

Erumbi S. Rangarajan, Abdalin Asinas, Ariane Proteau, Christine Munger, Jason Baardsnes, Pietro Iannuzzi, Allan Matte, and Miroslaw Cygler
Structure of [NiFe]-Hydrogenase Maturation Protein HypE from Escherichia coli and its Interaction with HypF
J. Bacteriol., Dec 2007; doi:10.1128/JB.01610-07

S. L. Matte, T. M. Laue, and R. H. Cote
Analysis of the Structure and Conformational Changes of Photoreceptor PDE6 Using Sedimentation Velocity
Invest. Ophthalmol. Vis. Sci., 2007; 48: 607.

M. Bryan Warf and J. Andrew Berglund
MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T
RNA, Dec 2007; 13: 2238 - 2251.

Maryline Fresquet, Thomas A. Jowitt, Joni Ylöstalo, Paul Coffey, Roger S. Meadows, Leena Ala-Kokko, David J. Thornton, and Michael D. Briggs
Structural and Functional Characterization of Recombinant Matrilin-3 A-domain and Implications for Human Genetic Bone Diseases
J. Biol. Chem., Nov 2007; 282: 34634 - 34643.

Young Kwan Kim, Kenji Mizutani, Kyung-Hee Rhee, Ki-Hyun Nam, Won Ho Lee, Eun Hye Lee, Eunice Eunkyeong Kim, Sam-Yong Park, and Kwang Yeon Hwang
Structural and Mutational Analysis of tRNA Intron-Splicing Endonuclease from Thermoplasma acidophilum DSM 1728: Catalytic Mechanism of tRNA Intron-Splicing Endonucleases
J. Bacteriol., Nov 2007; 189: 8339 - 8346.

Yana K. Reshetnyak, Michael Segala, Oleg A. Andreev, and Donald M. Engelman
A Monomeric Membrane Peptide that Lives in Three Worlds: In Solution, Attached to, and Inserted across Lipid Bilayers
Biophys. J., Oct 2007; 93: 2363 - 2372.

Tae Hyeon Yoo, A. James Link, and David A. Tirrell
Evolution of a fluorinated green fluorescent protein
PNAS, Aug 2007; 104: 13887 - 13890.

Yuanzheng Zhang, Frank Maley, Gladys F. Maley, Garry Duncan, David D. Dunigan, and James L. Van Etten
Chloroviruses Encode a Bifunctional dCMP-dCTP Deaminase That Produces Two Key Intermediates in dTTP Formation
J. Virol., Jul 2007; 81: 7662 - 7671.

Umakhanth Venkatraman Girija, Alister W. Dodds, Silke Roscher, Kenneth B. M. Reid, and Russell Wallis
Localization and Characterization of the Mannose-Binding Lectin (MBL)-Associated-Serine Protease-2 Binding Site in Rat Ficolin-A: Equivalent Binding Sites within the Collagenous Domains of MBLs and Ficolins
J. Immunol., Jul 2007; 179: 455 - 462.

Sylvie Auxilien, Fatima El Khadali, Anette Rasmussen, Stephen Douthwaite, and Henri Grosjean
Archease from Pyrococcus abyssi Improves Substrate Specificity and Solubility of a tRNA m5C Methyltransferase
J. Biol. Chem., Jun 2007; 282: 18711 - 18721.

Jade K. Forwood, Anil S. Thakur, Gregor Guncar, Mary Marfori, Dmitri Mouradov, Weining Meng, Jodie Robinson, Thomas Huber, Stuart Kellie, Jennifer L. Martin, David A. Hume, and Bostjan Kobe
Structural basis for recruitment of tandem hotdog domains in acyl-CoA thioesterase 7 and its role in inflammation
PNAS, Jun 2007; 104: 10382 - 10387.

Norihisa Yasui, Terukazu Nogi, Tomoe Kitao, Yoshimi Nakano, Mitsuharu Hattori, and Junichi Takagi
Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors
PNAS, Jun 2007; 104: 9988 - 9993.

Robert J. C. Gilbert, Yulya Gordiyenko, Tobias von der Haar, Andreas F.-P. Sonnen, Gregor Hofmann, Maria Nardelli, David I. Stuart, and John E. G. McCarthy
Reconfiguration of yeast 40S ribosomal subunit domains by the translation initiation multifactor complex
PNAS, Apr 2007; 104: 5788 - 5793.

C. T. Ranjith-Kumar, William Miller, Jin Xiong, William K. Russell, Roberta Lamb, Jonathan Santos, Karen E. Duffy, Larissa Cleveland, Mary Park, Kanchan Bhardwaj, Zhaoxiang Wu, David H. Russell, Robert T. Sarisky, M. Lamine Mbow, and C. Cheng Kao
Biochemical and Functional Analyses of the Human Toll-like Receptor 3 Ectodomain
J. Biol. Chem., Mar 2007; 282: 7668 - 7678.

Morris GA, Ang S, Hill SE, et al.
Molar mass and solution conformation of branched alpha(1 -> 4), alpha(1 -> 6) Glucans. Part I: Glycogens in water 
CARBOHYDRATE POLYMERS 71 (1): 101-108 JAN 5 2008

Handa N, Kishishita S, Morita S, et al.
Structure of the human Tim44 C-terminal domain in complex with pentaethylene glycol: ligand-bound form 
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 63: 1225-1234 Part 12 DEC 2007

Heath C, Posner MG, Aass HC, et al.
The 2-oxoacid dehydrogenase multi-enzyme complex of the archaeon Thermoplasma acidophilum - recombinant expression, assembly and characterization 
FEBS JOURNAL 274 (20): 5406-5415 OCT 2007

Alazard R, Mourey L, Ebel C, et al.
Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets 
NUCLEIC ACIDS RESEARCH 35 (13): 4420-4432 2007 

Kruh NA, Rawat R, Ruzsicska BP, et al.
Probing mechanisms of resistance to the tuberculosis drug isoniazid: Conformational changes caused by inhibition of InhA, the enoyl reductase from Mycobacterium tuberculosis 
PROTEIN SCIENCE 16 (8): 1617-1627 AUG 2007

Sano K, Asanuma-Date K, Arisaka F, et al.
Changes in glycosylation of vitronectin modulate multimerization and collagen binding during liver regeneration 
GLYCOBIOLOGY 17 (7): 784-794 JUL 2007

Patel TR, Harding SE, Ebringerova A, et al.
Weak self-association in a carbohydrate system 
BIOPHYSICAL JOURNAL 93 (3): 741-749 AUG 2007

Bailey MF, Van der Schans EJC, Millar DP
Dimerization of the klenow fragment of Escherichia coli DNA polymerase i is linked to its mode of DNA binding 
BIOCHEMISTRY 46 (27): 8085-8099 JUL 10 2007

Race PR, Solovyova AS, Banfield MJ
Conformation of the EPEC tir protein in solution: Investigating the impact of serine phosphorylation at positions 434/463 
BIOPHYSICAL JOURNAL 93 (2): 586-596 JUL 2007

Fernando AN, Furtado PB, Clark SJ, et al.
Associative and structural properties of the region of complement factor H encompassing the Tyr402His disease-related polymorphism and its interactions with heparin 
JOURNAL OF MOLECULAR BIOLOGY 368 (2): 564-581 APR 27 2007

Abe M, Ohno S, Yokogawa T, et al.
Detection of structural changes in a cofactor binding protein by using a wheat germ cell-free protein synthesis system coupled with unnatural amino acid probing 
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 67 (3): 643-652 MAY 15 2007

Lee SC, Stoilova-Mcphie S, Baxter L, et al.
Structural characterisation of the insecticidal toxin XptA1, reveals a 1.15 MDa tetramer with a cage-like structure 
JOURNAL OF MOLECULAR BIOLOGY 366 (5): 1558-1568 MAR 9 2007

Berkowitz SA, Philo JS
Monitoring the homogeneity of adenovirus preparations (a gene therapy delivery system) using analytical ultracentrifugation 
ANALYTICAL BIOCHEMISTRY 362 (1): 16-37 MAR 1 2007

Gabrielson JP, Randolph TW, Kendrick BS, et al.
Sedimentation velocity analytical ultracentrifugation and SEDFIT/c(s): Limits of quantitation for a monoclonal antibody system 
ANALYTICAL BIOCHEMISTRY 361 (1): 24-30 FEB 1 2007

Behlke J, Ristau O, Muller EC, et al.
Self-association of adrenodoxin studied by using analytical ultracentrifugation 
BIOPHYSICAL CHEMISTRY 125 (1): 159-165 JAN 2007

Rasa M, Lohmeijer BGG, Hofmeier H, et al.
Characterization of metallo-supramolecular block copolymers by analytical ultracentrifugation 
MACROMOLECULAR CHEMISTRY AND PHYSICS 207 (22): 2029-2041 NOV 24 2006

Ucci JW, Kobayashi Y, Choi G, et al.
Mechanism of interaction of the double-stranded RNA (dsRNA) binding domain of protein kinase R with short dsRNA sequences 
BIOCHEMISTRY 46 (1): 55-65 JAN 9 2007

Bosch M, Le KHD, Bugyi B, et al.
Analysis of the function of spire in actin assembly and its synergy with formin and profilin 
MOLECULAR CELL 28 (4): 555-568 NOV 30 2007

Gunzburg MJ, Perugini MA, Howlett GJ
Structural basis for the recognition and cross-linking of amyloid fibrils by human apolipoprotein E 
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (49): 35831-35841 DEC 7 2007

Wu JW, Yang YS, Zhang JH, et al.
Domain-swapped dimerization of the second PDZ domain of ZO2 may provide a structural basis for the polymerization of claudins 
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (49): 35988-35999 DEC 7 2007

Obiozo UM, Brondijk THC, White AJ, et al.
Substitution of tyrosine 146 in the dI component of proton-translocating transhydrogenase leads to reversible dissociation of the active dimer into inactive monomers 
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (50): 36434-36443 DEC 14 2007
 

Heavner GA, Arakawa T, Philo JS, et al.
Protein isolated from biopharmaceutical formulations cannot be used for comparative studies: Follow-up to "a case study using Epoetin alfa from Epogen and EPREV 
JOURNAL OF PHARMACEUTICAL SCIENCES 96 (12): 3214-3225 DEC 2007

Nemecek D, Gilcrease EB, Kang S, et al.
Subunit conformations and assembly states of a DNA-translocating motor: The terminase of bacteriophage P22 
JOURNAL OF MOLECULAR BIOLOGY 374 (3): 817-836 NOV 30 2007

Brown AK, Meng G, Ghadbane H, et al.
Dimerization of inositol monophosphatase Mycobacterium tuberculosis SuhB is not constitutive, but induced by binding of the activator Mg2+ 
BMC STRUCTURAL BIOLOGY 7: Art. No. 55 AUG 28 2007

Lu YL, Harding SE, Michaelsen TE, et al.
Solution conformation of wild-type and mutant IgG3 and IgG4 immunoglobulins using crystallohydrodynamics: Possible implications for complement activation 
BIOPHYSICAL JOURNAL 93 (11): 3733-3744 DEC 2007

Chang HC, Chen LY, Lu YH, et al.
Metal ions stabilize a dimeric molten globule state between the open and closed forms of malic enzyme 
BIOPHYSICAL JOURNAL 93 (11): 3977-3988 DEC 2007

Martin CA, Longman E, Wooding C, et al.
Cd36, a class B scavenger receptor, functions as a monomer to bind acetylated and oxidized low-density lipoproteins 
PROTEIN SCIENCE 16 (11): 2531-2541 NOV 2007

Stead MA, Trinh CH, Garnett JA, et al.
A beta-sheet interaction interface directs the tetramerisation of the Miz-1 POZ domain 
JOURNAL OF MOLECULAR BIOLOGY 373 (4): 820-826 NOV 2 2007

Roberts BR, Tainer JA, Getzoff ED, et al.
Structural characterization of zinc-deficient human superoxide dismutase and implications for ALS 
JOURNAL OF MOLECULAR BIOLOGY 373 (4): 877-890 NOV 2 2007

Pivovarova AV, Chebotareva NA, Chernik IS, et al.
Small heat shock protein Hsp27 prevents heat-induced aggregation of F-actin by forming soluble complexes with denatured actin 
FEBS JOURNAL 274 (22): 5937-5948 NOV 2007

Gress A, Volkel A, Schlaad H
Thio-click modification of poly [2-(3-butenyl)-2-oxazoline] 
MACROMOLECULES 40 (22): 7928-7933 OCT 30 2007

Bunkoczi G, Salah E, Filippakopoulos P, et al.
Structural and functional characterization of the human protein kinase ASK1 
STRUCTURE 15 (10): 1215-1226 OCT 2007

Jitrapakdee A, Surinya KH, Adina-Zada A, et al.
Conserved Glu40 and Glu433 of the biotin carboxylase domain of yeast pyruvate carboxylase I isoenzyme are essential for the association of tetramers 
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY 39 (11): 2120-2134 2007

Lee MJ, Huang HM, Lin W, et al.
Activation of Helicobacter pylori inorganic pyrophosphatase and the importance of Cys16 in thermostability, enzyme activation and quaternary structure 
ARCHIVES OF MICROBIOLOGY 188 (5): 473-482 NOV 2007

Heath C, Posner MG, Aass HC, et al.
The 2-oxoacid dehydrogenase multi-enzyme complex of the archaeon Thermoplasma acidophilum - recombinant expression, assembly and characterization 
FEBS JOURNAL 274 (20): 5406-5415 OCT 2007

Nyarko A, Mosbahi K, Rowe AJ, et al.
TPR-Mediated self-association of plant SGT1 
BIOCHEMISTRY 46 (40): 11331-11341 OCT 9 2007

Porrua O, Garcia-Jaramillo M, Santero E, et al.
The LysR-type regulator AtzR binding site: DNA sequences involved in activation, repression and cyanuric acid-dependent repositioning 
MOLECULAR MICROBIOLOGY 66 (2): 410-427 OCT 2007

Tarasev M, Kaddis CS, Yin S, et al.
Similar enzymes, different structures: Phthalate dioxygenase is an alpha(3)alpha(3) stacked hexamer, not an alpha(3)beta(3) trimer like "normal" Rieske oxygenases 
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 466 (1): 31-39 OCT 1 2007

Stewart CR, Haw A, Lopez R, et al.
Serum amyloid P colocalizes with apolipoproteins in human atheroma: functional implications 
JOURNAL OF LIPID RESEARCH 48 (10): 2162-2171 OCT 2007

Sanchez-Barbero F, Rivas G, Steinhilber W, et al.
Structural and functional differences among human surfactant proteins SP-A1, SP-A2 and co-expressed SP-A1/SP-A2: role of supratrimeric oligomerization 
BIOCHEMICAL JOURNAL 406: 479-489 Part 3 SEP 15 2007

Jobichen C, Li M, Yerushalmi G, et al.
Structure of GrIR and the implication of its EDED motif in mediating the regulation of type III secretion system in EHEC 
PLOS PATHOGENS 3 (5): 639-646 MAY 2007

Byres E, Alphey MS, Smith TK, et al.
Crystal structures of Trypanosoma brucei and Staphylococcus aureus mevalonate diphosphate decarboxylase inform on the determinants of specificity and reactivity 
JOURNAL OF MOLECULAR BIOLOGY 371 (2): 540-553 AUG 10 2007

Alazard R, Mourey L, Ebel C, et al.
Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets 
NUCLEIC ACIDS RESEARCH 35 (13): 4420-4432 2007

Ostendorp T, Leclerc E, Galichet A, et al.
Structural and functional insights into RAGE activation by multimeric S100B 
EMBO JOURNAL 26 (16): 3868-3878 AUG 22 2007

Akhter T, Zhao L, Kohda A, et al.
The neck of bacteriophage T4 is a ring-like formed by a hetero-oligomer of gp13 and structure gp14 
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 1774 (8): 1036-1043 AUG 2007

Gerard FCA, Ribeiro ED, Albertini AAV, et al.
Unphosphorylated Rhabdoviridae phosphoproteins form elongated dimers in solution 
BIOCHEMISTRY 46 (36): 10328-10338 SEP 11 2007

Ma C, Hou H, Tian W, et al.
Expression, purification and characterization of critical domains of munc13-1 
ACTA BIOCHIMICA ET BIOPHYSICA SINICA 39 (8): 617-623 AUG 2007

Rajagopal S, Kent SBH
Total chemical synthesis and biophysical characterization of the minimal isoform of the KChIP2 potassium channel regulatory subunit 
PROTEIN SCIENCE 16 (9): 2056-2064 SEP 2007

Der Ou H, Lohr F, Vogel V, et al.
Structural evolution of C-terminal domains in the p53 family 
EMBO JOURNAL 26 (14): 3463-3473 JUL 25 2007

Kruh NA, Rawat R, Ruzsicska BP, et al.
Probing mechanisms of resistance to the tuberculosis drug isoniazid: Conformational changes caused by inhibition of InhA, the enoyl reductase from Mycobacterium tuberculosis 
PROTEIN SCIENCE 16 (8): 1617-1627 AUG 2007

Prieto J, Redondo P, Padro D, et al.
The C-terminal loop of the homing endonuclease I-CreI is essential for site recognition, DNA binding and cleavage 
NUCLEIC ACIDS RESEARCH 35 (10): 3262-3271 MAY 2007

Madern D, Ebel C
Influence of an anion-binding site in the stabilization of halophilic malate dehydrogenase from Haloarcula marismortui 
BIOCHIMIE 89 (8): 981-987 AUG 2007

Jorissen HJMM, Ulery PG, Henry L, et al.
Dimerization and DNA-binding properties of the transcription factor Delta FosB 
BIOCHEMISTRY 46 (28): 8360-8372 JUL 17 2007

Pavlov GM, Korneeva EV, Ivanova NP, et al.
Synthesis and hydrodynamic and molecular characteristics of N-methacryloylglucosamine-N-vinylformamide copolymers 
RUSSIAN JOURNAL OF APPLIED CHEMISTRY 80 (5): 777-782 MAY 2007

Saxl RL, Maley GF, Hauer CR, et al.
Significance of mutations on the structural perturbation of thymidylate synthase: Implications for their involvement in subunit exchange 
PROTEIN SCIENCE 16 (7): 1439-1448 JUL 2007

Boukari H, Sackett DL, Schuck P, et al.
Single-walled tubulin ring polymers 
BIOPOLYMERS 86 (5-6): 424-436 AUG 5 2007

Kroe RR, Baker MA, Brown MP, et al.
Agonist versus antagonist induce distinct thermodynamic modes of co-factor binding to the glucocorticoid receptor 
BIOPHYSICAL CHEMISTRY 128 (2-3): 156-164 JUL 2007

Race PR, Solovyova AS, Banfield MJ
Conformation of the EPEC tir protein in solution: Investigating the impact of serine phosphorylation at positions 434/463 
BIOPHYSICAL JOURNAL 93 (2): 586-596 JUL 2007

Stroebel D, Sendra V, Cannella D, et al.
Oligomeric behavior of the RND transporters CusA and AcrB in micellar solution of detergent 
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 1768 (6): 1567-1573 JUN 2007

Dey S, Hu ZQ, Xu XL, et al.
The effect of hinge mutations on effector binding and domain rotation in Escherichia coli D-3-phosphoglycerate dehydrogenase 
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (25): 18418-18426 JUN 22 2007

Su KL, Wen TH, Chou CY, et al.
Structural variation manipulates the differential oxidative susceptibility and conformational stability of apolipoprotein E isoforms 
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 68 (1): 363-374 JUL 2007

Guazzaroni ME, Krell T, del Arroyo PG, et al.
The transcriptional repressor TtgV recognizes a complex operator as a tetramer and induces convex DNA bending 
JOURNAL OF MOLECULAR BIOLOGY 369 (4): 927-939 JUN 15 2007

Krell T, Teran W, Mayorga OL, et al.
Optimization of the palindromic order of the TtgR operator enhances binding cooperativity 
JOURNAL OF MOLECULAR BIOLOGY 369 (5): 1188-1199 JUN 22 2007

Sokolowska M, Kaus-Drobek M, Czapinska H, et al.
Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA 
JOURNAL OF MOLECULAR BIOLOGY 369 (3): 722-734 JUN 8 2007

Ghaderi D, Strauss HM, Reinke S, et al.
Evidence for dynamic interplay of different oligomeric states of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase by biophysical methods 
JOURNAL OF MOLECULAR BIOLOGY 369 (3): 746-758 JUN 8 2007

Yun MK, Nourse A, White SW, et al.
Crystal structure and allosteric regulation of the cytoplasmic Escherichia coli L-asparaginase I 
JOURNAL OF MOLECULAR BIOLOGY 369 (3): 794-811 JUN 8 2007

He YZ, Fan KQ, Jia CJ, et al.
Characterization of a hyperthermostable Fe-superoxide dismutase from hot spring 
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 75 (2): 367-376 MAY 2007

Kang Y, Chen X, Lary JW, et al.
Defining how ubiquitin receptors hHR23a and S5a bind polyubiquitin 
JOURNAL OF MOLECULAR BIOLOGY 369 (1): 168-176 MAY 25 2007

Munoz-Espin D, Fuertes MA, Jimenez M, et al.
Structural and functional analysis of phi 29 p16.7C dimerization mutants - Identification of a novel aromatic cage dimerization motif 
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (22): 16521-16531 JUN 1 2007

Meremyanin AV, Eronina TB, Chebotareva NA, et al.
Effect of alpha-crystallin on thermal aggregation of glycogen phosphorylase b from rabbit skeletal muscle 
BIOCHEMISTRY-MOSCOW 72 (5): 518-528 MAY 2007

Romier C, James N, Birck C, et al.
Crystal structure, biochemical and genetic characterization of yeast and E-cuniculi TAF(II)5 N-terminal domain: Implications for TRID assembly 
JOURNAL OF MOLECULAR BIOLOGY 368 (5): 1292-1306 MAY 18 2007

Gloyd M, Ghirlando R, Matthews LA, et al.
MukE and MukF form two distinct high affinity complexes 
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (19): 14373-14378 MAY 11 2007

Liu YZ, Chen W, Gaudet J, et al.
Structural basis for recognition of SMRT/N-CoR by the MYND domain and its contribution to AML1/ETO's activity 
CANCER CELL 11 (6): 483-497 JUN 2007

Ceci P, Mangiarotti L, Rivetti C, et al.
The neutrophil-activating Dps protein of Helicobacter pylori, HP-NAP, adopts a mechanism different from Escherichia coli Dps to bind and condense DNA 
NUCLEIC ACIDS RESEARCH 35 (7): 2247-2256 APR 2007

Fernando AN, Furtado PB, Clark SJ, et al.
Associative and structural properties of the region of complement factor H encompassing the Tyr402His disease-related polymorphism and its interactions with heparin 
JOURNAL OF MOLECULAR BIOLOGY 368 (2): 564-581 APR 27 2007

Kaus-Drobek M, Czapinska H, Sokolowska M, et al.
Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically 
NUCLEIC ACIDS RESEARCH 35 (6): 2035-2046 MAR 2007

Stewart CR, Wilson LM, Zhang Q, et al.
Oxidized cholesterol metabolites found in human atherosclerotic lesions promote apolipoprotein C-II amyloid fibril formation 
BIOCHEMISTRY 46 (18): 5552-5561 MAY 8 2007

Iwanczyk J, Damjanovic D, Kooistra J, et al.
Role of the PDZ domains in Escherichia coli DegP protein 
JOURNAL OF BACTERIOLOGY 189 (8): 3176-3186 APR 2007

Chou WY, Cheng YS, Ho CL, et al.
Human spot 14 protein interacts physically and functionally with the thyroid receptor 
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 357 (1): 133-138 MAY 25 2007

Reddick LE, Vaughn MD, Wright SJ, et al.
In vitro comparative kinetic analysis of the chloroplast toc GTPases 
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (15): 11410-11426 APR 13 2007

Richter CD, Stanmore DA, Miguel RN, et al.
Autonomous folding of interdomain regions of a modular polyketide synthase 
FEBS JOURNAL 274 (9): 2196-2209 MAY 2007

Sgraja T, Smith TK, Hunter WN
Structure, substrate recognition and reactivity of Leishmania major mevalonate kinase 
BMC STRUCTURAL BIOLOGY 7: Art. No. 20 MAR 30 2007

Stokke R, Madern D, Fedoy AE, et al.
Biochemical characterization of isocitrate dehydrogenase from Methylococcus capsulatus reveals a unique NAD(+)-dependent homotetrameric enzyme 
ARCHIVES OF MICROBIOLOGY 187 (5): 361-370 MAY 2007

Costenaro L, Grossmann JG, Ebel C, et al.
Modular structure of the full-length DNA gyrase B subunit revealed by small-angle X-ray scattering 
STRUCTURE 15 (3): 329-339 MAR 2007

Fernando H, Davydov DR, Chin CC, et al.
Role of subunit interactions in P450 oligomers in the loss of homotropic cooperativity in the cytochrome P450 3A4 mutant L211F/D214E/F304W 
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 460 (1): 129-140 APR 1 2007

Zorrilla S, Doan T, Alfonso C, et al.
Inducer-modulated cooperative binding of the tetrameric CggR repressor to operator DNA 
BIOPHYSICAL JOURNAL 92 (9): 3215-3227 MAY 1 2007

Rodikova EA, Kovalevskiy OV, Mayorov SG, et al.
Two HlyIIR dimers bind to a long perfect inverted repeat in the operator of the hemolysin II gene from Bacillus cereus 
FEBS LETTERS 581 (6): 1190-1196 MAR 20 2007

Sennhauser G, Amstutz P, Briand C, et al.
Drug export pathway of multidrug exporter AcrB revealed by DARPin inhibitors 
PLOS BIOLOGY 5 (1): 106-113 JAN 2007

Nunez-Ramirez R, Velten M, Rivas G, et al.
Loading a ring: Structure of the Bacillus subtilis DnaB protein, a co-loader of the replicative helicase 
JOURNAL OF MOLECULAR BIOLOGY 367 (3): 764-769 MAR 30 2007

Fu CY, Morais MC, Battisti AJ, et al.
Molecular dissection of O29 scaffolding protein function in an in vitro assembly system 
JOURNAL OF MOLECULAR BIOLOGY 366 (4): 1161-1173 MAR 2 2007

Hoskins AA, Morar M, Kappock TJ, et al.
N-5-CAIR mutase: Role of a CO2 binding site and substrate movement in catalysis 
BIOCHEMISTRY 46 (10): 2842-2855 MAR 13 2007

Carroll KL, Ghirlando R, Ames JM, et al.
Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements 
RNA-A PUBLICATION OF THE RNA SOCIETY 13 (3): 361-373 MAR 2007

Ejima D, Tsumoto K, Fukada H, et al.
Effects of acid exposure on the conformation, stability, and aggregation of monoclonal antibodies 
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 66 (4): 954-962 MAR 2007

Jomaa A, Damjanovic D, Leong V, et al.
The inner cavity of Escherichia coli DegP protein is not essential for molecular chaperone and proteolytic activity 
JOURNAL OF BACTERIOLOGY 189 (3): 706-716 FEB 2007

Chang HP, Chou CY, Chang GG
Reversible unfolding of the severe acute respiratory syndrome coronavirus main protease in guanidinium chloride 
BIOPHYSICAL JOURNAL 92 (4): 1374-1383 FEB 15 2007

Khanova HA, Markossian KA, Kleimenov SY, et al.
Effect of alpha-crystallin on thermal denaturation and aggregation of rabbit muscle glyceraldehyde-3 phosphate dehydrogenase 
BIOPHYSICAL CHEMISTRY 125 (2-3): 521-531 FEB 2007

Heise CT, Le Duff CS, Boter M, et al.
Biochemical characterization of RAR1 cysteine- and histidine-rich domains (CHORDs): A novel class of zinc-dependent protein-protein interaction modules 
BIOCHEMISTRY 46 (6): 1612-1623 FEB 13 2007

Ramachandran R, Surka M, Chappie JS, et al.
The dynamin middle domain is critical for tetramerization and higher-order self-assembly 
EMBO JOURNAL 26 (2): 559-566 JAN 24 2007

Wolthers KR, Toogood HS, Jowitt TA, et al.
Crystal structure and solution characterization of the activation domain of human methionine synthase 
FEBS JOURNAL 274 (3): 738-750 FEB 2007

J. Mans, K. Natarajan, A. Balbo, P. Schuck, D. Eikel, S. Hess, H. Robinson, S. Jonjic, C.T. Tiemessen, D.M. Margulies.  (2007) Cellular expression and crystal structure of the murine cytomegalovirus MHC-Iv glycoprotein, m153 Journal of Biological Chemistry 282:35247-35258

Li HM, Zhao YW, Guo Y, VanVranken SJ, Li Z, Eisele L, Mourad W (2007) Mutagenesis, biochemical, and biophysical characterization of Mycoplasma arthritidis-derived mitogen. MOLECULAR IMMUNOLOGY 44 (5): 763-773

Datta SA, Curtis JE, Ratcliff W, Clark PK, Crist RM, Lebowitz J, Krueger S, Rein A. (2007) Conformation of the HIV-1 Gag Protein in Solution. J Mol Biol. 2007 Jan 19;365(3):812-24.

Gabrielson JP, Randolph TW, Kendrick BS, Stoner MR. (2007) Sedimentation velocity analytical ultracentrifugation and SEDFIT/c(s): Limits of quantitation for a monoclonal antibody system. Anal Biochem. 2007 Feb 1;361(1):24-30. Epub 2006 Nov 28.
 

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Kate N. Bishop, Gulnahar B. Mortuza, Steven Howell, Melvyn W. Yap, Jonathan P. Stoye, and Ian A. Taylor (2006) Characterization of an Amino-Terminal Dimerization Domain from Retroviral Restriction Factor Fv1. Journal of Virology, August 2006, p. 8225-8235, Vol. 80, No. 16

Jomaa A, Damjanovic D, Leong V, Ghirlando R, Iwanczyk J, Ortega J.(2006) The Inner Cavity of Escherichia coli DegP Protein is not Essential for Molecular Chaperone and Proteolytic Activity. J Bacteriol. 2006 Nov 22; [Epub ahead of print]

McLellan JS, Yao S, Zheng X, Geisbrecht BV, Ghirlando R, Beachy PA, Leahy DJ. (2006) Structure of a heparin-dependent complex of Hedgehog and Ihog. Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17208-13. Epub 2006 Oct 31.

Iwaya N, Goda N, Unzai S, Fujiwara K, Tanaka T, Tomii K, Tochio H, Shirakawa M, Hiroaki H. (2006) Fine-tuning of protein domain boundary by minimizing potential coiled coil regions. J Biomol NMR. 2006 Dec 16; [Epub ahead of print]

Deka RK, Brautigam CA, Tomson FL, Lumpkins SB, Tomchick DR, Machius M, Norgard MV. (2006) Crystal structure of the Tp34 (TP0971) lipoprotein of Treponema pallidum: Implications of its metal-bound state and affinity for human lactoferrin. J Biol Chem. 2006 Dec 27; [Epub ahead of print]

Egan CA, Houston KM, Alcocer MJ, Solovyova A, Tate R, Lochnit G, McInnes IB, Harnett MM, Geyer R, Byron O, Harnett W. (2006) Lack of immunological cross-reactivity between parasite-derived and recombinant forms of ES-62, a secreted protein of Acanthocheilonema viteae. Parasitology. 2006 Feb;132(Pt 2):263-74. Epub 2005 Oct 11

Gillian E. Begg, Lyle Carrington, Philippa H. Stokes, Jacqueline M. Matthews, Merridee A. Wouters, Ahsan Husain, Laszlo Lorand, Siiri E. Iismaa, and Robert M. Graham. (2006) Mechanism of allosteric regulation of transglutaminase 2 by GTP. PNAS 103(52):19683-19688

Lee HJ, Chen YS, Chou CY, Chien CH, Lin CH, Chang GG, Chen X. (2006) Investigation of the Dimer Interface and Substrate Specificity of Prolyl Dipeptidase DPP8. J Biol Chem. 2006 Dec 15;281(50):38653-62.

Shimp RL Jr, Martin LB, Zhang Y, Henderson BS, Duggan P, MacDonald NJ, Lebowitz J, Saul A, Narum DL. (2006) Abstract Production and characterization of clinical grade Escherichia coli derived Plasmodium falciparum 42 kDa merozoite surface protein 1 (MSP1(42)) in the absence of an affinity tag. Protein Expr Purif. 2006 Nov;50(1):58-67. Epub 2006 Jun 27.

Smith AM, Jahn TR, Ashcroft AE, Radford SE. (2006) Direct observation of oligomeric species formed in the early stages of amyloid fibril formation using electrospray ionisation mass spectrometry. J Mol Biol. 2006 Nov 17;364(1):9-19.

Li H, Zhao Y, Guo Y, Li Z, Eisele L, Mourad W. (2006) Zinc induces dimerization of the class II MHC molecule that leads to cooperative binding to a superantigen. J Biol Chem. 2006 Dec 13.

Markossian KA, Khanova HA, Kleimenov SY, Levitsky DI, Chebotareva NA, Asryants RA, Muronetz VI, Saso L, Yudin IK, Kurganov BI. (2006) Abstract Mechanism of thermal aggregation of rabbit muscle glyceraldehyde-3-phosphate dehydrogenase. Biochemistry. 2006 Nov 7;45(44):13375-84.

Sanchez, HP, Tatarenko, K, Nigen, M, Pavlov, G, Imberty, A, Lortat-Jacob, H, de la Torre, JG, Ebel, C. (2006) Organization of human interferon gamma-heparin complexes from solution properties and hydrodynamics. Biochemistry. 2006 Nov 7;45(44):13227-38.

Leslie E. Eisele, Karen J. Chave, Andrew C. Lehning and Thomas J. Ryan (2006) Characterization of Human-glutamyl hydrolase in solution demonstrates that the enzyme is a non-dissociating homodimer. Biochim Biophys Acta. 2006 Sep;1764(9):1479-86.


Safferling RB, Abarca-Heidemann K, Korschen HG, Tziatzios C, Stoldt M, Budyak I, Willbold D, Schwalbe H, Klein-Seetharaman J, Kaupp UB (2006) Glutamic acid-rich proteins of rod photoreceptors are natively unfolded. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (3): 1449-1460 JAN 20 2006

Tjernberg A, Markova N, Griffiths WJ, Hallen D (2006) DMSO-related effects in protein characterization. JOURNAL OF BIOMOLECULAR SCREENING 11 (2): 131-137 MAR 2006

Chandran V, Stollar EJ, Lindorff-Larsen K, Harper JF, Chazin WJ, Dobson CM, Luisi BF, Christodoulou J (2006) Structure of the regulatory apparatus of a calciumdependent protein kinase (CDPK): A novel mode of calmodulin-target recognition. JOURNAL OF MOLECULAR BIOLOGY 357 (2): 400-410 MAR 24 2006

Eccleston JF, Petrovic A, Davis CT, Rangachari K, Wilson RJM (2006) The kinetic mechanism of the SufC ATPase - The cleavage step is accelerated by SufB. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (13): 8371-8378 MAR 31 2006

Chou YT, Yao SH, Czerwinski R, Fleming M, Krykbaev R, Xuan DJ, Zhou HF, Brooks J, Fitz L, Strand J, Presman E, Lin L, Aulabaugh A, Huang XY (2006) Kinetic characterization of recombinant human acidic mammalian chitinase BIOCHEMISTRY 45 (14): 4444-4454 APR 11 2006

Martinek TA, Hetenyi A, Fulop L, Mandity IM, Toth GK, Dekany I, Fulop F (2006) Secondary structure dependent self-assembly of beta-peptides into nanosized fibrils and membranes. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 45 (15): 2396-2400 2006

Cladiere L, Hamze K, Madec E, Levdikov VM, Wilkinson AJ, Holland IB, Seror SJ (2006) The GTPase, CpgA(YloQ), a putative translation factor, is implicated in morphogenesis in Bacillus subtilis. MOLECULAR GENETICS AND GENOMICS 275 (4): 409-420 APR 2006

Liu YZ, Cheney MD, Gaudet JJ, Chruszcz M, Lukasik SM, Sugiyama D, Lary J, Cole J, Dauter Z, Minor W, Speck NA, Bushweller JH (2006) The tetramer structure of the Nervy homology two domain, NHR2, is critical for AM1/ETO's activity. CANCER CELL 9 (4): 249-260 APR 2006

Carneiro MJVM, Zhang WK, Ioannou C, Scott DJ, Allen S, Roberts CJ, Soultanas P (2006) The DNA-remodelling activity of DnaD is the sum of oligomerization and DNA-binding activities on separate domains. MOLECULAR MICROBIOLOGY 60 (4): 917-924 MAY 2006

Tabarani G, Reina JJ, Ebel C, Vives C, Lortat-Jacob H, Rojo J, Fieschi F (2006) Mannose hyperbranched dendritic polymers interact with clustered organization of DC-SIGN and inhibit gp120 binding. FEBS LETTERS 580 (10): 2402-2408 MAY 1 2006

Karlstrom M, Steen IH, Madern D, Fedoy AE, Birkeland NK, Ladenstein R (2006) The crystal structure of a hyperthermostable subfamily II isocitrate dehydrogenase from Thermotoga maritima. FEBS JOURNAL 273 (13): 2851-2868 JUL 2006

Lobo VJSA, Cuesta AM, Sanz L, Compte M, Garcia P, Prieto J, Blanco FJ, Alvarez-Vallina L (2006) Enhanced antiangiogenic therapy with antibody-collagen XVIII NCl domain fusion proteins engineered to exploit matrix remodeling events. INTERNATIONAL JOURNAL OF CANCER 119 (2): 455-462 JUL 15 2006

Miller DJ, Zhang YM, Rock CO, White SW (2006) Structure of RhlG, an essential beta-ketoacyl reductase in the rhamnolipid Biosynthetic pathway of Pseudomonas aeruginosa. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (26): 18025-18032 JUN 30 2006

Makeeva VF, Chebotareva NA, Andreeva IE, Livanova NB, Kurganov BI (2006) Interaction of phosphorylase kinase from rabbit skeletal muscle with flavin adenine dinucleotide. BIOCHEMISTRY-MOSCOW 71 (6): 652-657 JUN 2006

Molina ML, Barrera FN, Fernandez AM, Poveda JA, Renart ML, Encinar JA, Riquelme G, Gonzalez-Ros JM (2006) Clustering and coupled gating modulate the activity in KcsA, a potassium channel model. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (27): 18837-18848 JUL 7 2006

Smolle M, Prior AE, Brown AE, Cooper A, Byron O, Lindsay JG (2006) A new level of architectural complexity in the human pyruvate dehydrogenase complex. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (28): 19772-19780 JUL 14 2006

Morimoto K, Yamashita E, Kondou Y, Lee SJ, Arisaka F, Tsukihara T, Nakai M (2006) The asymmetric IscA homodimer with an exposed [2Fe-2S] cluster suggests the structural basis of the fe-S cluster biosynthetic scaffold. JOURNAL OF MOLECULAR BIOLOGY 360 (1): 117-132 JUN 30 2006

Han S, Forman MD, Loulakis P, Rosner MH, Xie Z, Wang H, Danley DE, Yuan W, Schafer J, Xu ZY (2006) Crystal structure of nicotinic acid mononucleotide adenylyltransferase from Staphyloccocus aureus: Structural basis for NaAD interaction in functional dimer. JOURNAL OF MOLECULAR BIOLOGY 360 (4): 814-825 JUL 21 2006

Boucher IW, McMillan PJ, Gabrielsen M, Akerman SE, Brannigan JA, Schnick C, Brzozowski AM, Wilkinson AJ, Muller S (2006) Structural and biochemical characterization of a mitochondrial peroxiredoxin from Plasmodium falciparum. MOLECULAR MICROBIOLOGY 61 (4): 948-959 AUG 2006

Cass DM, Berglund JA (2006) The SF3b155 N-terminal domain is a scaffold important for splicing. BIOCHEMISTRY 45 (33): 10092-10101 AUG 22 2006

Lee HJ, Lai YH, Huang YT, Huang CW, Chen YH, Chang GG (2006) Critical role of tryptophanyl residues in the conformational stability of goose delta-crystallin. EXPERIMENTAL EYE RESEARCH 83 (3): 658-666 SEP 2006

Rousselot M, Jaenicke E, Lamkemeyer T, Harris JR, Pirow R (2006) Native and subunit molecular mass and quarternary structure of the hemoglobin from the primitive branchiopod crustacean Triops cancriformis. FEBS JOURNAL 273 (17): 4055-4071 SEP 2006

Hayashi MK, Ames HM, Hayashi Y (2006) Tetrameric hub structure of postsynaptic scaffolding protein Homer. JOURNAL OF NEUROSCIENCE 26 (33): 8492-8501 AUG 15 2006

Hatters DM, Zhong N, Rutenber E, Weisgraber KH (2006) Amino-terminal domain stability mediates apolipoprotein E aggregation into neurotoxic fibrils. JOURNAL OF MOLECULAR BIOLOGY 361 (5): 932-944 SEP 1 2006

Tadros M, Gonzalez JM, Rivas G, Vicente M, Mingorance J (2006) Activation of the Escherichia coli cell division protein FtsZ by a low-affinity interaction with monovalent cations. FEBS LETTERS 580 (20): 4941-4946 SEP 4 2006

Myronova N, Kitmitto A, Collins RF, Miyaji A, Dalton H (2006) Three-dimensional structure determination of a protein supercomplex that oxidizes methane to formaldehyde in Methylococcus capsulatus (Bath). BIOCHEMISTRY 45 (39): 11905-11914 OCT 3 2006

Wang TX, Colfen H (2006) In situ investigation of complex BaSO4 fiber generation in the presence of sodium polyacrylate. 1. Kinetics and solution analysis. LANGMUIR 22 (21): 8975-8985 OCT 10 2006

Grainge I, Gaudier M, Schuwirth BS, Westcott SL, Sandall J, Atanassova N, Wigley DB (2006) Biochemical analysis of a DNA replication origin in the archaeon Aeropyrum pernix. JOURNAL OF MOLECULAR BIOLOGY 363 (2): 355-369 OCT 20 2006

Hara S, Motohashi K, Arisaka F, Romano PGN, Hosoya-Matsuda N, Kikuchi N, Fusada N, Hisabori T (2006) Thioredoxin-h1 reduces and reactivates the oxidized cytosolic malate dehydrogenase dimer in higher plants. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (43): 32065-32071 OCT 27 2006

Carter DM, Miousse IR, Gagnon JN, Martinez E, Clements A, Lee J, Hancock MA, Gagnon H, Pawelek PD, Coulton JW (2006) Interactions between TonB from Escherichia coli and the periplasmic protein FhuD. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (46): 35413-35424 NOV 17 2006

Kukimoto-Niino M, Takagi T, Akasaka R, Murayama K, Uchikubo-Kamo T, Terada T, Inoue M, Watanabe S, Tanaka A, Hayashizaki Y, Kigawa T, Shirouzu M, Yokoyama S (2006) Crystal structure of the RUN domain of the RAP2-interacting protein x. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (42): 31843-31853 OCT 20 2006

Haruta N, Kurokawa Y, Murayama Y, Akamatsu Y, Unzai S, Tsutsui Y, Iwasaki H (2006) The Swi5-Sfr1 complex stimulates Rhp51/Rad51- and Dmc1-mediated DNA strand exchange in vitro. NATURE STRUCTURAL & MOLECULAR BIOLOGY 13 (9): 823-830 SEP 2006

Handa N, Kukimoto-Niino M, Akasaka R, Murayama K, Terada T, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Nunokawa E, Tanaka A, Hayashizaki Y, Kigawa T, Shirouzu M, Yokoyama S (2006) Structure of the UNC5H2 death domain. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 62: 1502-1509 Part 12, DEC 2006
 

Mellody KT, Freeman LJ, Baldock C, Jowitt TA, Siegler V, Raynal BD, Cain SA, Wess TJ, Shuttleworth CA, Kielty CM. (2006) Marfan syndrome-causing mutations in fibrillin-1 result in gross morphological alterations and highlight the structural importance of the second hybrid domain.J. Biol. Chem., Vol. 281, Issue 42, 31854-31862, October 20, 2006

David G. Pina, Javier Gomez, Patrick England, Constantin T. Craescu, Ludger Johannes and Valery L. Shnyrov. (2006) Characterization of the non-native trifluoroethanol-induced intermediate conformational state of the Shiga toxin B-subunit. Biochimie. 2006 Sep;88(9):1199-207.

Summer H, Bruderer R, Weber-Ban E. (2006) Characterization of a new AAA+ protein from archaea. J Struct Biol. 2006 Oct;156(1):120-9.

Lu YL, Longman E, Davis KG, Ortega A, Grossmann JG, Michaelsen TE, de la Torre JG, Harding SE (2006). Crystallohydrodynamics of protein assemblies: Combining sedimentation, viscometry, and X-ray scattering. BIOPHYSICAL JOURNAL 91 (5): 1688-1697 SEP 2006

Eldredge J, Berkowitz S, Corin AF, Day ES, Hayes D, Meier W, Strauch K, Zafari M, Tadi M, Farrington GK (2006) Stoichiometry of LT beta R binding to LIGHT. BIOCHEMISTRY 45 (33): 10117-10128 AUG 22 2006

Lebaupain F, Salvay AG, Olivier B, Durand G, Fabiano AS, Michel N, Popot JL, Ebel C, Breyton C, and Pucci B. (2006) Lactobionamide Surfactants with Hydrogenated, Perfluorinated or Hemifluorinated Tails: Physical-Chemical and Biochemical
Characterization.
Langmuir 22(21):8881-8890

Wang T, Colfen H (2006) In Situ Investigation of Complex BaSO(4) Fiber Generation in the Presence of Sodium Polyacrylate. 1. Kinetics and Solution Analysis. Langmuir 2006 Oct 10;22(21):8975-85

J. Liu, J.D. Andya, S.J. Shire. (2006) A critical review of analytical ultracentrifugation and field flow fractionation methods for measuring protein aggregation.  AAPS Journal 8:E580

S.A. Berkowitz. (2006) Role of analytical ultracentrifugation in assessing the aggregation of protein biopharmaceuticals. AAPS Journal 8:E590

J.S. Philo (2006) Is any measurement method optimal for all aggregate sizes and types? AAPS Journal 8:E564

J.C.D. Houtman, H. Yamaguchi, M. Barda-Saad, A. Graiman, B. Bowden, E. Appella, P. Schuck, L.E. Samelson (2006) Oligomerization of signaling complexes by the multipoint binding of Grb2 to both LAT and Sos1. Nature Structural and Molecular Biology (Epub ahead of print)       

A.C.K. Chan, B. Lelj-Garolla, F.I. Rosell, K.A. Pedersen, A.G. Mauk, and M.E.P. Murphy (2006) Cofacial heme binding is linked to dimerization by a bacterial heme transport protein. Journal of Molecular Biology 362:1108-1119

J. Dam, J. Barber, A. Grishaev, E.L. Malchiodi, P. Schuck, A. Bax, R.A. Mariuzza (2006) Variable dimerization of the Ly49A natural killer cell receptor results in differential engagement of its MHC class I ligand.  Journal of Molecular Biology 362:102-113

Borges JC, Pereira JH, Vasconcelos IB, Dos Santos GC, Olivieri JR, Ramos CH, Palma MS, Basso LA, Santos DS, de Azevedo WF Jr. (2006) Phosphate closes the solution structure of the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) from Mycobacterium tuberculosis. Archives of Biochemistry and Biophysics (Epub ahead of print)

Yang M, Horii K, Herr AB, Kirley TL (2006) 'Calcium-dependent dimerization of human soluble calcium activated nucleotidase: Characterization of the dimer interface.' J Biol Chem 2006 Jul [Epub ahead of print]

Deechongkit S, Aoki KH, Park SS, Kerwin BA (2006) 'Biophysical comparability of the same protein from different manufacturers: A case study using Epoetin alfa from Epogen(R) and Eprex(R).' J Pharm Sci 2006 Jul 18 [Epub ahead of print]

F.G. Pearce, M.A. Perugini, H.J. McKerchar, J.A. Gerrard (2006) Dihydrodipicolinate synthase from Thermotoga maritima. Biochemical Journal Epub ahead of print.

Alexei V Korennykh, Joseph A Piccirilli, Carl C Correll (2006) The electrostatic character of the ribosomal surface enables extraordinarily rapid target location by ribotoxins. Nature Structural & Molecular Biology 13, 436 - 443 (2006)

Maria J. V. M. Carneiro1, Wenke Zhang, Charikleia Ioannou, David J. Scott, Stephanie Allen, Clive J. Roberts and Panos Soultanas (2006) The DNA-remodelling activity of DnaD is the sum of oligomerization and DNA-binding activities on separate domains. Molecular Microbiology Volume 60 Page 917 - May 2006 doi:10.1111/j.1365-2958.2006.05152.x Volume 60 Issue 4

Urano F, Hayashi N, Arisaka F, Kurita H, Murata S, Ichinose H (2006) Molecular mechanism for pterin-mediated inactivation of tyrosine hydroxylase: Formation of insoluble aggregates of tyrosine hydroxylase. JOURNAL OF BIOCHEMISTRY 139 (4): 625-635 APR 2006

Eswaran J, Debreczeni JE, Longman E, Barr AJ, Knapp S (2006) The crystal structure of human receptor protein tyrosine phosphatase kappa phosphatase domain 1. PROTEIN SCIENCE 15 (6): 1500-1505 JUN 2006

McGeehan JE, Papapanagiotou I, Streeter SD, Kneale GG (2006) Cooperative binding of the C.Ahdl controller protein to the C/R promoter and its role in endonuclease gene expression. JOURNAL OF MOLECULAR BIOLOGY 358 (2): 523-531 APR 28 2006

Hughes RK, Belfield EJ, Muthusamay M, Khan A, Rowe A, Harding SE, Fairhurst SA, Bornemann S, Ashton R, Thorneley RNF, Casey R (2006) Characterization of Medicago truncatula (barrel medic) hydroperoxide lyase (CYP74C3), a water-soluble detergent-free cytochrome P450 monomer whose biological activity is defined by monomer-micelle association. BIOCHEMICAL JOURNAL 395: 641-652 Part 3 MAY 1 2006

Li P, Kuo WL, Yousef M, Rosner MR, Tang WJ (2006) The C-terminal domain of human insulin degrading enzyme is required for dimerization and substrate recognition. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 343 (4): 1032-1037 MAY 19 2006

Wilton R, Yousef MA, Saxena P, Szpunar M, Stevens FJ (2006) Expression and purification of recombinant human receptor for advanced glycation endproducts in Escherichia coli. PROTEIN EXPRESSION AND PURIFICATION 47 (1): 25-35 MAY 2006

Campanero-Rhodes MA, Menendez MM, Saiz JL, Sanz L, Calvete JJ, Solis D (2006) Zinc ions induce the unfolding and self-association of boar spermadhesin PSP-I, a protein with a single CUB domain architecture, and promote its binding to heparin. BIOCHEMISTRY 45 (27): 8227-8235 JUL 11 2006

Patel HV, Vyas KA, Savtchenko R, Roseman S (2006) The monomer/dimer transition of enzyme I of the Escherichia coli phosphotransferase system. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (26): 17570-17578 JUN 30 2006

Patel HV, Vyas KA, Mattoo RL, Southworth M, Perler FB, Comb D, Roseman S (2006) Properties of the C-terminal domain of enzyme I of the Escherichia coli phosphotransferase system. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (26): 17579-17587 JUN 30 2006

Lin SW, Yuan TM, Li JR, Lin CH (2006) Carboxyl terminus of Helicobacter pylori alpha 1,3-fucosyltransferase determines the structure and stability. BIOCHEMISTRY 45 (26): 8108-8116 JUL 4 2006

Faudry E, Santana JM, Ebel C, Vernet T, Teixeira ARL (2006) Salivary apyrases of Triatoma infestans are assembled into homo-oligomers. BIOCHEMICAL JOURNAL
396: 509-515 Part 3 JUN 15 2006


Chou CY, Jen WP, Hsieh YH, Shiao MS, Chang GG. (2006) Structural and functional variations in human apolipoprotein e3 and e4.  J Biol Chem. 2006 May 12;281(19):13333-44. Epub 2006 Mar 14

Eakin CM, Berman AJ, Miranker AD. (2006) A native to amyloidogenic transition regulated by a backbone trigger. Nat Struct Mol Biol. 2006 Mar;13(3):202-8. Epub 2006 Feb 19.

Shiue SJ, Kao KM, Leu WM, Chen LY, Chan NL, Hu NT. (2006) XpsE oligomerization triggered by ATP binding, not hydrolysis, leads to its association with XpsL.  EMBO J. 2006 Apr 5;25(7):1426-35. Epub 2006 Mar 9.

Gralle M, Oliveira CLP, Guerreiro LH, McKinstry WJ, Galatis D, Masters CL, Cappai R, Parker MW, Ramos CHI, Torriani I, Ferreira ST (2006) Solution conformation and heparin-induced dimerization of the full-length extracellular domain of the human amyloid precursor protein.  JOURNAL OF MOLECULAR BIOLOGY 357 (2): 493-508 MAR 24 2006

Li SJ, Hong XG, Shi YY, Li H, Wang CC (2006) Annular arrangement and collaborative actions of four domains of protein-disulfide isomerase - A small angle X-ray scattering study in solution.
JOURNAL OF BIOLOGICAL CHEMISTRY 281 (10): 6581-6588 MAR 10 2006

Milano SK, Kim YM, Stefano FP, Benovic JL, Brenner C (2006) Nonvisual arrestin oligomerization and cellular localization are regulated by inositol hexakisphosphate binding. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (14): 9812-9823 APR 7 2006

Mileni M, MacMillan F, Tziatzios C, Zwicker K, Haas AH, Mantele W, Simon J, Lancaster CRD (2006) Heterologous production in Wolinella succinogenes and characterization of the quinol :  fumarate reductase enzymes from Helicobacter pylori and Campylobacter jejuni. BIOCHEMICAL JOURNAL 395: 191-201 Part 1 APR 1 2006

Lherbet C, Pojer F, Richard SB, Noel JP, Poulter CD (2006) Absence of substrate channeling between active sites in the Agrobacterium tumefaciens IspDF and IspE enzymes of the methyl erythritol phosphate pathway. 
BIOCHEMISTRY 45 (11): 3548-3553 MAR 21 2006

Pullan L, Mullapudi S, Huang Z, Baldwin PR, Chin C, Sun W, Tsujimoto S, Kolodziej SJ, Stoops JK, Lee JC, Waxham MN, Bean AJ, Penczek PA (2006) The endosome-associated protein Hrs is hexameric and controls cargo sorting as a "master molecule". STRUCTURE 14 (4): 661-671 APR 2006

Ravaud S, Do Cao MA, Jidenko M, Ebel C, Le Maire M, Jault JM, Di Pietro A, Haser R, Aghajari N. (2006) The ABC transporter BmrA from Bacillus subtilis is a functional dimer when in a detergent-solubilized state.  Biochem J. 2006 Apr 15;395(2):345-53. 

Svedruzic, ZM, Spivey, HO (2006) TI Interaction between mammalian glyceraldehyde-3-phosphate dehydrogenase and L-lactate dehydrogenase from heart and muscle. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 63(3):501-511

Walker JR, Altamentova S, Ezersky A, Lorca G, Skarina T, Kudritska M, Ball LJ, Bochkarev A, Savchenko A (2006) Structural and biochemical study of effector molecule recognition by the E. coli glyoxylate and allantoin utilization regulatory protein AIIR. JOURNAL OF MOLECULAR BIOLOGY 358 (3): 810-828 MAY 5 2006

Garcia AD, Otero J, Lebowitz J, Schuck P, Moss B (2006) Quaternary structure and cleavage specificity of a poxvirus Holliday junction resolvase. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (17): 11618-11626 APR 28 2006

Lelj-Garolla B., Mauk A.G. (2006) Self-association and chaperone activity of Hsp27 are thermally activated.  Journal of Biological Chemistry 281:8169-8174

O'Neill JW, Manion MK, Maguire B, Hockenbery DM (2006) BCL-X-L dimerization by three-dimensional domain swapping. JOURNAL OF MOLECULAR BIOLOGY 356 (2): 367-381 FEB 17 2006


J.A. Rumfeldt, P.B. Stathopulos, A. Chakrabarrty, J.R. Lepock, E.M. Meiering (2006) Mechanism and thermodynamics of guadinium chloride-induced denaturation of ALS-associated mutant Cu,Zn superoxide dismutases.  Journal of Molecular Biology 355:106-123

Bader R, Bamford R, Zurdo J, Luisi BF, Dobson CM (2006) Probing the mechanism of amyloidogenesis through a tandem repeat of the PI3-SH3 domain suggests a generic model for protein aggregation and fibril formation. JOURNAL OF MOLECULAR BIOLOGY 356 (1): 189-208 FEB 10 2006

Gareus R, Di Nardo A, Rybin V, Witke W (2006) Mouse profilin 2 regulates endocytosis and competes with SH3 ligand binding to dynamin 1. JOURNAL OF BIOLOGICAL CHEMISTRY 281 (5): 2803-2811 FEB 3 2006

Harmer NJ, Robinson CJ, Adam LE, Ilag LL, Robinson CV, Gallagher JT, Blundell TL (2006) Multimers of the fibroblast growth factor (FGF)-FGF receptor-saccharide complex are formed on long oligomers of heparin BIOCHEMICAL JOURNAL 393: 741-748 Part 3 FEB 1 2006

Vander Kooi CW, Ohi MD, Rosenberg JA, Oldham ML, Newcomer ME, Gould KL, Chazin WJ (2006) The Prp19 U-box crystal structure suggests a common dimeric architecture for a class of oligomeric E3 ubiquitin ligases.  BIOCHEMISTRY 45 (1): 121-130 JAN 10 2006

Wei P, Fan KQ, Chen H, Ma L, Huang CK, Tan L, Xi D, Li CM, Liu Y, Cao AN, Lai LH. (2006) The N-terminal octapeptide acts as a dimerization inhibitor of SARS coronavirus 3C-like proteinase BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 339 (3): 865-872 JAN 20 2006

Testa CA, Lherbet C, Pojer F, Noel JP, Poulter CD (2006) Cloning and expression of IspDF from Mesorhizobium loti. Characterization of a bifunctional protein that catalyzes non-consecutive steps in the methylerythritol phosphate pathway. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 1764 (1): 85-96 JAN 2006

Fairlie WD, Perugini MA, Kvansakul M, Chen L, Huang DCS, Colman PM (2006) CED-4 forms a 2 : 2 heterotetrameric complex with CED-9 until specifically displaced by EGL-1 or CED-13. CELL DEATH AND DIFFERENTIATION 13 (3): 426-434 MAR 2006

S. Meyer, R. Dutzler (2006) Crystal structure of the cytoplasmic domain of the chloride channel ClC-0. Structure 14: 229-307
 

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Credle JJ, Finer-Moore JS, Papa FR, Stroud RM, Walter P (2005) On the mechanism of sensing unfolded protein in the endoplasmic reticulum. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (52): 18773-18784 DEC 27 2005

Sun Z, Almogren A, Furtado PB, Chowdhury B, Kerr MA, Perkins SJ (2005) Semi-extended solution structure of human myeloma immunoglobulin D determined by constrained X-ray scattering. JOURNAL OF MOLECULAR BIOLOGY 353 (1): 155-173 OCT 14 2005

Guarino LA, Bhardwaj K, Dong W, Sun JC, Holzenburg A, Kao C (2005) Mutational analysis of the SARS virus Nsp15 endoribonuclease: Identification of residues affecting hexamer formation. JOURNAL OF MOLECULAR BIOLOGY 353 (5): 1106-1117 NOV 11 2005

Carter DM, Kornblatt JA (2005) Interactions between canine plasminogen and 8-anilino-1-naphthalene sulfonate: Structural insights from a fluorescent probe.  CELLULAR AND MOLECULAR BIOLOGY 51: OL755-OL765 Suppl. S 2005

Schneeweis LA, Willard D, Milla ME (2005) Functional dissection of osteoprotegerin and its interaction with receptor activator of NF-kappa B ligand JOURNAL OF BIOLOGICAL CHEMISTRY 280 (50): 41155-41164 DEC 16 2005

Nadella M, Bianchet MA, Gabelli SB, Barrila J, Amzel LM (2005) Structure and activity of the axon guidance protein MICAL. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (46): 16830-16835

Credle JJ, Finer-Moore JS, Papa FR, Stroud RM, Walter P (2005) On the mechanism of sensing unfolded protein in the endoplasmic reticulum. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (52): 18773-18784 DEC 27 2005

Nogales J, Canales A, Jimenez-Barbero J, Garcia JL, Diaz E (2005) Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440 - The prototype of a new subgroup of extradiol dioxygenases. JOURNAL OF BIOLOGICAL CHEMISTRY 280 (42): 35382-35390 OCT 21 2005

Liu H, Stafford WF, Bouvier M (2005) The endoplasmic reticulum lumenal domain of the adenovirus type 2 E3-19K protein binds to peptide-filled and peptide-deficient HLA-A*1101 molecules. JOURNAL OF VIROLOGY 79 (21): 13317-13325 NOV 2005

Aldaz-Carroll L, Whitbeck JC, de Leon MP, Lou H, Pannell LK, Lebowitz J, Fogg C, White CL, Moss B, Cohen GH, Eisenberg RJ (2005) Physical and immunological characterization of a recombinant secreted form of the membrane protein encoded by the vaccinia virus L1R gene. VIROLOGY 341 (1): 59-71 OCT 10 2005

Foss TR, Wiseman RL, Kelly JW (2005) The pathway by which the tetrameric protein transthyretin dissociates. BIOCHEMISTRY 44 (47): 15525-15533 NOV 29 2005

Edelstein C, Yousef M, Scanu AM (2005) Elements in the C terminus of apolipoprotein[a] responsible for the binding to the tenth type III module of human fibronectin. JOURNAL OF LIPID RESEARCH 46 (12): 2673-2680 DEC 2005

Barrera FN, Renart ML, Molina ML, Poveda JA, Encinar JA, Fernandez AM, Neira JL, Gonzalez-Ros JM (2005) Unfolding and refolding in vitro of a tetrameric, alpha-helical membrane protein: The prokaryotic potassium channel KcsA. BIOCHEMISTRY 44 (43): 14344-14352 NOV 1 2005

Davydov DR, Fernando H, Baas BJ, Sligar SG, Halpert JR (2005) Kinetics of dithionite-dependent reduction of cytochrome P450 3A4: Heterogeneity of the enzyme caused by its oligomerization. BIOCHEMISTRY 44 (42): 13902-13913 OCT 25 2005

Aurikko JP, Ruotolo BT, Grossmann JG, Moncrieffe MC, Stephens E, Leppanen VM, Robinson CV, Saarma M, Bradshaw RA, Blundell TL (2005) Characterization of symmetric complexes of nerve growth factor and the ectodomain of the pan-neurotrophin receptor, p75(NTR) JOURNAL OF BIOLOGICAL CHEMISTRY 280 (39): 33453-33460 SEP 30 2005

Ceci P, Ilari A, Falvo E, Giangiacomo L, Chiancone E (2005) Reassessment of protein stability, DNA binding, and protection of Mycobacterium smegmatis Dps JOURNAL OF BIOLOGICAL CHEMISTRY 280 (41): 34776-34785 OCT 14 2005

Cameron S, McLuskey K, Chamberlayne R, Hallyburton I, Hunter WN (2005) Initiating a crystallographic analysis of recombinant (S)-2-hydroxypropylphosphonic acid epoxidase from Streptomyces wedmorensis. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 61: 534-536 Part 5 MAY 2005

Saijo S, Sato T, Kumasaka T, Tanaka N, Harata K, Odahara T (2005) Crystallization and preliminary X-ray studies on the reaction center-light-harvesting 1 core complex from Rhodopseudomonas viridis. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 61: 83-86 Part 1 JAN 2005

Ritter LM, Arakawa T, Goldberg AFX (2005) Predicted and measured disorder in peripherin/rds, a retinal tetraspanin. PROTEIN AND PEPTIDE LETTERS
12 (7): 677-686 OCT 2005

Zhu JH, Burgner JW, Harms E, Belitsky BR, Smith JL (2005) A new arrangement of (beta/alpha)(8) barrels in the synthase subunit of PLP synthase. JOURNAL OF BIOLOGICAL CHEMISTRY 280 (30): 27914-27923 JUL 29 2005

Szajner P, Weisberg AS, Lebowitz J, Heuser J, Moss B (2005) External scaffold of spherical immature poxvirus particles is made of protein trimers, forming a honeycomb lattice. JOURNAL OF CELL BIOLOGY 170 (6): 971-981 SEP 12 2005

Villarino A, Duran R, Wehenkel A, Fernandez P, England P, Brodin P, Cole ST, Zimny-Arndt U, Jungblut PR, Cervenansky C, Alzari PM (2005) Proteomic identification of M. tuberculosis protein kinase substrates: PknB recruits GarA, a FHA domain-containing protein, through activation loop-mediated interactions JOURNAL OF MOLECULAR BIOLOGY 350 (5): 953-963 JUL 29 2005

Naoe Y, Arita K, Hashimoto H, Kanazawa H, Sato M, Shimizu T (2005) Structural characterization of calcineurin B homologous protein 1. JOURNAL OF BIOLOGICAL CHEMISTRY 280 (37): 32372-32378 SEP 16 2005

Parent KN, Doyle SM, Anderson E, Teschke CM (2005) Electrostatic interactions govern both nucleation and elongation during phage P22 procapsid assembly. VIROLOGY 340 (1): 33-45 SEP 15 2005

Orsomando G, de la Garza RD, Green BJ, Peng MS, Rea PA, Ryan TJ, Gregory JF, Hanson AD (2005) Plant gamma-glutamyl hydrolases and folate polyglutamates. JOURNAL OF BIOLOGICAL CHEMISTRY 280 (32): 28877-28884 AUG 12 2005

Carmelo E, Barilla D, Golovanov AP, Lian LY, Derome A, Hayes F (2005) The unstructured N-terminal tail of ParG modulates assembly of a quaternary nucleoprotein complex in transcription repression. JOURNAL OF BIOLOGICAL CHEMISTRY 280 (31): 28683-28691 AUG 5 2005

Ohi MD, Kooi CWV, Rosenberg JA, Ren LP, Hirsch JP, Chazin WJ, Walz T, Gould KL (2005) Structural and functional analysis of essential pre-mRNA splicing factor Prp19p. MOLECULAR AND CELLULAR BIOLOGY 25 (1): 451-460 JAN 2005

Moncrieffe MC, Stott KM, Gay NJ (2005) Solution structure of the isolated Pelle death domain. FEBS LETTERS 579 (18): 3920-3926 JUL 18 2005

Lara B, Rico AI, Petruzzelli S, Santona A, Dumas J, Biton J, Vicente M, Mingorance J, Massidda O (2005) Cell division in cocci: localization and properties of the Streptococcus pneumoniae FtsA protein. MOLECULAR MICROBIOLOGY 55 (3): 699-711 FEB 2005

Choi YW, Park SG, Yoo J, Jung GH. (2005) Calcium ions affect the hepatitis B virus core assembly. VIROLOGY 332 (1): 454-463 FEB 5 2005

Mauk MR, Rosell FI, Lelj-Garolla B, Moore GR, Mauk AG. (2005) Metal ion binding to human hemopexin. BIOCHEMISTRY 44 (6): 1864-1871 FEB 15 2005

Callaghan AJ, Redko Y, Murphy LM, Grossmann JG, Yates D, Garman E, Ilag LL, Robinson CV, Symmons MF, McDowall KJ, Luisi BF (2005) "Zn-Link": A metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E. BIOCHEMISTRY 44 (12): 4667-4675 MAR 29 2005

Foss TR, Kelker MS, Wiseman RL, Wilson IA, Kelly JW (2005) Kinetic stabilization of the native state by protein engineering: Implications for inhibition of transthyretin amyloidogenesis. JOURNAL OF MOLECULAR BIOLOGY 347 (4): 841-854 APR 8 2005

Hunter DJB, Roberts GA, Ost TWB, White JH, Muller S, Turner NJ, Flitsch SL, Chapman SK (2005) Analysis of the domain properties of the novel cytochrome P450RhF. FEBS LETTERS 579 (10): 2215-2220 APR 11 2005

Pancera M, Lebowitz J, Schon A, Zhu P, Freire E, Kwong PD, Roux KH, Sodroski J, Wyatt R (2005) Soluble mimetics of human immunodeficiency virus type 1 viral spikes produced by replacement of the native trimerization domain with a heterologous trimerization motif: Characterization and ligand binding analysis. JOURNAL OF VIROLOGY 79 (15): 9954-9969 AUG 2005

Stewart CR, Tseng AA, Mok YF, Staples MK, Schiesser CH, Lawrence LJ, Varghese JN, Moore KJ, Howlett GJ (2005) Oxidation of low-density lipoproteins induces amyloid-like structures that are recognized by macrophages. BIOCHEMISTRY 44 (25): 9108-9116 JUN 28 2005

Schlieper D, Oliva MA, Andreu JM, Lowe J (2005) Structure of bacterial tubulin BtubA/B: Evidence for horizontal gene transfer. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (26): 9170-9175 JUN 28 2005

Toro-Roman A, Mack TR, Stock AM (2005) Structural analysis and solution studies of the activated regulatory domain of the response regulator ArcA: A symmetric dimer mediated by the alpha 4-beta 5-alpha 5 face. JOURNAL OF MOLECULAR BIOLOGY 349 (1): 11-26 MAY 27 2005

Pavlov GM, Nazarova OV, Ebel C, Mikhailova NA, Zaitseva II, Bokov SN, Litvinova LS, Afanas'eva EV, Korneeva EV, Panarin EF (2005) Molecular characteristics of star-like polyvinylpyrrolidone with fullerene C-60 as the branching site in dilute solutions. RUSSIAN JOURNAL OF APPLIED CHEMISTRY 78 (1): 130-136 JAN 2005

Wiseman RL, Johnson SM, Kelker MS, Foss T, Wilson IA, Kelly JW (2005) Kinetic stabilization of an oligomeric protein by a single ligand binding event.  JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 127 (15): 5540-5551 APR 20 2005

Chou CY, Lin YL, Huang YC, Sheu SY, Lin TH, Tsay HJ, Chang GG, Shiao MS (2005) Structural variation in human apolipoprotein E3 and E4: Secondary structure, tertiary structure, and size distribution. BIOPHYSICAL JOURNAL 88 (1): 455-466 JAN 2005

Nollmann M, Byron O, Stark WM (2005) Behavior of Tn3 resolvase in solution and its interaction with res. BIOPHYSICAL JOURNAL 89 (3): 1920-1931 SEP 2005

Li HM, Van Vranken S, Zhao Y, Li Z, Guo Y, Eisele L, Li YX (2005) Crystal structures of T cell receptor beta chains related to rheumatoid arthritis. PROTEIN SCIENCE 14 (12): 3025-3038 DEC 2005

Naud JF, McDuff FO, Sauve S, Montagne M, Webb BA, Smith SP, Chabot B, Lavigne P. (2005) Structural and thermodynamical characterization of the complete p21 gene product of Max. BIOCHEMISTRY 44 (38): 12746-12758 SEP 27 2005

Weber ANR, Moncrieffe MC, Gangloff M, Imler JL, Gay NJ (2005) Ligand-receptor and receptor-receptor interactions act in concert to activate signaling in the Drosophila toll pathway. JOURNAL OF BIOLOGICAL CHEMISTRY 280 (24): 22793-22799 JUN 17 2005

Breuer S, Gerlach H, Kolaric B, Urbanke C, Opitz N, Geyer M. (2005) Biochemical Indication for Myristoylation-Dependent Conformational Changes in HIV-1 Nef. Biochemistry. 2006 Feb 21;45(7):2339-2349.

* M.A. Talavera, E.E. Matthews, W.K. Eliason, I. Sagi, J. Wang, A. Henn, E.M. De La Cruz (2005) Hydrodynamic characterization of the DEAD-box RNA helicase DbpA.  Journal of Molecular Biology 355:697-707

* J. Fethiere, D. Venzke, D.R. Madden, B. Bottcher. (2005) Peripheral stator of the yeast V-ATPase: stoichiometry and specificity of interaction between the EG complex and subunits C and H.  Biochemistry 44:15906-14

* S.G. Odintsov, I. Sabala, G. Bourenkov, V. Rybin, M. Bochtler. (2005) Substrate access to the active sites in aminopeptidase T, a representative of a new metallopeptidase clan.  Journal of Molecular Biology 354:403-412

* M. Jimenez, J.L. Saiz, S. Andre, H.J. Gabius, D. Solis. (2005) Monomer/dimer equilibrium of the AB-type lectin from mistletoe enables combination of toxin/agglutinin activities in one protein: analysis of native and citraconylated proteins by ultracentrifugation/gel filtration and cell biological consequences of dimer destabilization.  Glycobiology 15:1386-1395

* F. Garrido, M. Gasset, J. Sanz-Aparicio, C. Alfonso, M.A. Pajares. (2005) Rat liver betaine-homocysteine S-methyltransferase equilibrium unfolding: insights into intermediate structure through tryptophan substitutions.  Biochemical Journal 391:589-599

* Y. Itoh, S. Unzai, M. Sato, A. Nagadoi, M. Okuda, Y. Nishimura, S. Akashi. (2005) Investigation of molecular size of transcription factor TFIIE in solution.  Proteins 61:633-641

* Y. Shimizu, H. Morii, F. Arisaka, M. Tanokura (2005) Stalk region of kinesin-related protein Unc104 has moderate ability to form coiled-coil dimer. Biochemical and Biophysical Research Communications 337:868-874

* B.R. Burgess, P. Schuck, D.N. Garboczi (2005) Dissection of a merozoite surface protein 3, a representative of a family of plasmodium falciparum surface proteins, reveals an oligomeric and highly elongated molecule.  Journal of Biological Chemistry 280:37236-37245

* K.M. Skillman, T.J. Barnard, J.H. Peterson, R. Ghirlando, H.D. Bernstein. (2005) Efficient secrection of a folded protein by a monomeric bacterial autotransporter.  Molecular Microbiology 58:945-958

* M. Nollmann, O. Byron, W.M. Stark. (2005) Behavior of Tn3 resolvase in solution and its interaction with res. Biophysical Journal 89:1920-1931

* J. Liu, M.D. Nguyen, J.D. Andya, S.J. Shire. (2005) Reversible self-association increases the viscosity of a concentrated monoclonal antibody in aqueous solution.  Journal of Pharmaceutical Sciences 94:1928-1940

* S.J. Greive, A.F. Lins, P.H. von Hippel. (2005) Assembly of an RNA-protein complex: Binding of NusB and NusE (S10) proteins to boxA RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in E. coli.  Journal of Biological Chemistry [Epub ahead of print]

* J. Li, J.J. Correia, L. Wang, J.O. Trent, J.B. Chaires. (2005) Not so crystal clear: the structure of the human telomere G-quadruplex in solution differs from that present in a crystal.  Nucleic Acids Research 33:4649-4659

* S. Boulant, C. Vanbelle, C. Ebel, F. Penin, J.P. Lavergne. (2005) Hepatitis C virus core protein is a dimeric alpha-helical protein exhibiting membrane protein features.  Journal of Virology 27:11353-11365

* D. Noy, B.M. Discher, I.V. Rubtsov, R.M. Hochstrasser, and P.L. Dutton (2005).  Design of amphiphilic protein maquettes: Enhancing maquette functionality through binding of extremely hydrophobic cofactors to lipophilic domains.  Biochemistry (in press)

* S.G. Odintsov, I. Sabala, G. Bourenkov, V. Rybin, M. Bochtler. (2005) Staphylococcus aureus aminopeptidase S is a founding member of a new peptidase clan. Journal of Biological Chemistry 380:27792-27799

* R. Olson, E. Gouaux. (2005) Crystal structure of the vibrio cholerae cytolysin (VCC) pro-toxin and its assembly into a heptameric transmembrane pore.  Journal of Molecular Biology 350:997-1016

* J.A. Kornblatt and P. Schuck. (2005) The influence of temperature on the conformation of canine plasminogen: an analytical ultracentrifugation and dynamic light scattering study.  Biochemistry 44:13122-13131

* P.G. Wilmann, J. Petersen, A. Pettikiriarachchi, B.M. Buckle, S.C. Smith, S. Olsen, M.A. Perugini, R.J. Devenish, M. Prescott, J. Rossjohn. (2005) The 2.1A crystal structure of the far-red fluorescent protein HcRed: inherent conformational flexibility of the chromophore.  Journal of Molecular Biology 349-233-237

* M.A. Perugini, M.D.W. Griffin, B.J. Smith, L.E. Webb, A.J. Davis, E. Handman, J.A. Gerrard. (2005) Insight into the self-association of key enzymes from pathogenic species.  European Biophysics Journal 34:469-476

* A.H. Clayton, M.A. Perugini, J. Weinstock, J. Rothacker, K.G. Watson, A.W. Burgess, E.C. Nice. (2005) Fluorescence and analytical ultracentrifugation analyses of the interaction of the tyrosine kinase inhibitor, tyrophostin AG1478-mesylate, with albumin. Analytical Biochemistry 342:292-299

* R. Ravulapalli, B.G. Diaz, R.L. Campbell, P.L. Davies. (2005) Homodimerization of calpain 3 penta-EF-hand domain. Biochemical Journal 388:585-591

* W.C. Hsu, H.C. Chang, C.Y. Chou, P.J. Tsai, P.I. Lin, G.G. Chang. (2005) Critical assessment of important regions in the subunit association and catalytic action of the severe acute respiratory syndrome coronavirus main protease.  Journal of Biological Chemistry 280:22741-22748

* C.L. Gee, A. Nourse, A.Y. Hsin, Q. Wu, J.D. Tyndall, G.L. Grunewald, M.J. McLeish, J.L. Martin. (2005) Disulfide-linked dimers of human adrenaline synthesizing enzyme PNMT are catalytically active.  Biochem. Biophys. Acta 1750:82-92

* Y. Hu, Z. Sun, J.T. Eaton, P.M. Bouloux, S.J. Perkins. (2005) Extended and flexible domain solution structure of the extracellular matrix protein anosmin-1 by x-ray scattering, analytical ultracentrifugation and constrained modelling.  Journal of Molecular Biology.  350:553-570

* K.H. Minor, C.R. Schar, G.E. Blouse, J.D. Shore, D.A. Lawrence, P. Schuck, C.B. Peterson. (2005) A mechanism for assembly of complexes of vitronectin and plasminogen activator inhibitor-1 from sedimentation velocity analysis.  Journal of Biological Chemistry.  Epub ahead of print

* Lee HJ, Lai YH, Wu SY, Chen YH (2005) The effect of N-terminal truncation on double-dimer assembly of goose delta-crystallin. BIOCHEMICAL JOURNAL 392: 545-554 Part 3 DEC 15 2005

* C.B. Marshall, A. Chakrabartty, P.L. Davies. (2005) Hyperactive antifreeze protein from winter flounder is a very long rod-like dimer of alpha-helices.  Journal of Biological Chemistry 280:17920-17929

* J. Mingorance, M. Tadros, M. Vicente, J.M. Gonzales, G. Rivas, M. Velez. (2005) Visualization of single Escherichia coli Ftsz filament dynamics with atomic force microscopy. Journal of Biological Chemistry Epub ahead of print

* J.M. Mancheno, H. Tateno, I.J. Goldstein, M. Martinez-Ripoll, J.A. Hermoso. (2005) Structural analysis of the Laetiporus sulphureus hemolytic pore-forming lectin in complex with sugars. Journal of Biological Chemistry 280:17251-17259

* G. Robin, S. DeBonis, A. Dornier, G. Cappello, C. Ebel, R.H. Wade, D. Thierry-Mieg, F. Kozielski (2005) Essential kinesins: Characterization of Caenorhabditis elegans KLP-15. Biochemistry 44:6526-6536

* M.A. Dura, V. Receveur-Brechot, J.-P. Andrieu, C. Ebel, G. Schoehn, A. Roussel, B. Franzetti. (2005) Characterization of a TET-like aminopeptidase complex from teh hyperthermophilic archaeon Pyrococcus horikoshii.  Biochemistry 44:3477-3486

* E. Cohen, R. Goldshleger, A. Shainskaya, D.M. Tal, C. Ebel, M. le Maire, S.J. Karlish. (2005) Purification of Na+,K+-ATPase expressed in Pichia pastoris reveals an essential role of phospholipid-protein interactions. Journal of Biological Chemistry 280:16610-16618

* C.M. Khursigara, G. De Crescenzo, P.D. Pawalek, J.W. Coulton. (2005) Deletion of the proline-rich region of TonB disrupts formation of a 2:1 complex with FhuA, an outer membrane receptor of Escherichia coli. Protein Science 14:1266-1273

* I.M. Yu, C.L. Gustafson, J. Diao, J.W. Burgner II, Z. Li, J. Zhang, J. Chen. (2005) Recombinant SARS coronavirus nucleocapsid protein forms a dimer through its C-terminal domain. Journal of Biological Chemistry 280:23280-23286.

* S.S. Doun, J.W. Burgner II, S.D. Briggs, V.W. Rodwell. (2005) Enterococcus faecalis phosphomevalonate kinase. Protein Science 14:1134-1139

* G. Witte, C. Urbanke, U. Curth (2005) Single-stranded DNA-binding protein of Deinococcus radiodurans: a biophysical characterization. Nucleic Acids Research 33:1662-1670

* E. Yikilmaz, T.A. Rouault, P. Schuck (2005) Self-association and ligand-induced conformational changes of iron-regulatory proteins 1 and 2. Biochemistry 44:8470-8478

* S.A. Gaidamakov, I.I. Gorshkova, P. Schuck, M. Haruki, H. Yamada, S.M. Cerritelli, R.J. Crouch. (2005) Eukaryotic RNases H1 act processively by interactions through the duplex RNA-binding domain.  Nucleic Acids Research 33:2166-2175

* G.A. Snyder, P. Torabi-Parizi, J.M. Ford, J.A. Arthos, P. Schuck, M. Colonna, P.D. Sun. (2005) The DC-SIGN and DC-SIGNR repeat oligomerizes the receptor and increases gp120 binding affinity.  Journal of Virology 79:4589-4598.

* G.K. Hom, J.K. Lassila, L.M. Thomas, S.L. Mayo. (2005) Dioxane contributes to the altered conformation and oligomerization state of a designed engrailed homeodomain variant.  Protein Science 14:1115-1119

* M.A. Dura, V. Receveur-Brechot, J.P. Andrieu, C. Ebel, G. Schoehn, A. Roussel, B. Franzetti. (2005) Characterization of a TET-like aminopeptidase complex from the hyperthermophilic archaeon pyrococcus horikoshii.  Biochemistry 44:3477-3486

* C.M. Khursigara, G. De Crescenzo, P.D. Pawalek, J.W. Coulton. (2005) Kinetic analyses reveal multiple steps in forming TonB-FhuA complexes from escherichia coli. Biochemistry 44:3441-3453

* V. Vogel, D. Lochmann, J. Weyermann, G. Mayer, C. Tziatzios, J.A. van den Broek, W. Haase, D. Wouters, U.S. Schubert, J. Kreuter, A. Zimmer, D. Schubert.  (2005) Oligonucleotide-protamine-albumin nanoparticles: preparation, physical properties, and intracellular distribution.  J. Control Release 103:99-111

* V. Ruiz-Ferrer, J. Boskovic, C. Alfonso, G. Rivas, O. Llorca, D. Lopez-Abella, J.J. Lopez-Moya. (2005) Structural analysis of tobacco etch potyvirus HC-Pro oligomers involved in aphid transmission.  Journal of Virology 79:3758-3765

* M.A. Dura, V. Receveur-Brechot, J.-P. Andrieu, C. Ebel, G. Schoehn, A. Roussel, B. Franzetti. (2005) Characterization of a TET-like aminopeptidase complex from the hyperthermophilic archaeon pyrococcus horikoshii.  Biochemistry 44:3477-3486

* E. Cohen, R. Goldshleger, A. Shainskaya, D.M. Tal, C. Ebel, M. leMaire, S.J.D. Karlish. (2005) Purification of Na+,K+-ATPase expressed in p. pastoris reveals an essential role of phospholipid-protein interactions.  JBC Papers in Press

* L. Costenaro, J.G. Grossmann, C. Ebel, A. Maxwell. (2005) Small-angle x-ray scattering reveals the solution structure of the full-length DNA gyrase a subunit.  Structure 13:287-296

* J.J. Adams, B.A. Webb, H.L. Spencer, S.P. Smith. (2005) Structural characterization of type II dockerin module from the cellulosome of clostridium thermocellum: calcium-induced effects on conformation and target recognition.  Biochemistry 44:2173-2182

* T.L. Winstone, M. Jidenko, M. LeMaire, C. Ebel, K.A. Duncalf, R.J. Turner. (2005) Organic solvent extracted EmrE solubilized in dodecyl maltoside is monomeric and binds drug ligand.  Biochemical and Biophysical Research Communications 327:437-445

* M.M. Che, E.S. Boja, H.-Y. Yoon, J. Gruschus, H. Jaffe, S. Stauffer, P. Schuck, H.M. Fales, P.A. Randazzo.  (2005) Regulation of ASAP1 by phospholipids is dependent on the interface between the PH and arf GAP domains.  Cellular Signalling 17:1276-1288

* T.H. Millard, G. Bompard, M.Y. Heung, T.R. Dafforn, D.J. Scott, L.M. Machesky, K. Futterer. (2005) Structural basis of filopodia formation induced by the IRSp53/MIM homology domain of hunan IRSp53.  EMBO Journal 24:240-250

* D. Lochman, V. Vogel, J. Weyermann, N. Dinauer, H. Von Briesen, J. Kreuter, D. Schubert, A. Zimmer.  (2005) Physicochemical characterization of protamine-phosphorothioate nanoparticles.  Journal of Microencapsulation 21:625-641

* J.M. Gonzales, M. Velez, M. Jimenez, C. Alfonso, P. Schuck, J. Mingorance, M. Vicente, A.P. Minton, and G. Rivas. (2005) The cooperative behavior of E. Coli cell division protein FtsZ assembly involves the preferential cyclization of long single-stranded fibrils. Proceedings of the National Academy of Sciences USA 102:1895-1900

* O.J. Gaiser, L.J. Ball, P. Schmieder, D. Leitner, H. Strauss, M. Wahl, R. Kuhne, H. Oschkinat, U. Heinemann. (2005) Solution structure, backbone dynamics, and association behavior of the C-terminal BRCT domain from the breast cancer-associated protein BRCA1.  Biochemistry 43:15983-15995

* P.A. Lemaire, J. Lary, J.L. Cole (2005) Mechanism of PKR activation: dimerization and kinase activation in the absence of double-stranded RNA.  Journal of Molecular Biology 345:81-90

* B. Lelj-Garolla, A.G. Mauk (2005) Self-association of a small heat shock protein. Journal of Molecular Biology 345:631-642

* A. Balbo, K.H. Minor, C.A. Velikovsky, R.A. Mariuzza, C.B. Peterson, P. Schuck (2005) Studying multi-protein complexes by multi-signal sedimentation velocity analytical ultracentrifugation.  Proceedings of the National Academy of Sciences 102:81-86

horizontal rule

Beddoe T, Bushell SR, Perugini MA, Lithgow T, Mulhern TD, Bottomley SP, Rossjohn J (2004) A biophysical analysis of the tetratricopeptide repeat-rich mitochondrial import receptor, Tom70, reveals an elongated monomer that is inherently flexible, unstable, and unfolds via a multistate pathway. JOURNAL OF BIOLOGICAL CHEMISTRY 279 (45): 46448-46454 NOV 5 2004

Chou CY, Chang HC, Hsu WC, Lin TZ, Lin CH, Chang GG (2004) Quaternary structure of the severe acute respiratory syndrome (SARS) coronavirus main protease. BIOCHEMISTRY 43 (47): 14958-14970 NOV 30 2004

Fitzgerald DJ, DeLuca C, Berger I, Gaillard H, Sigrist R, Schimmele K, Richmond TJ. (2004) Reaction cycle of the yeast Isw2 chromatin remodeling complex.  EMBO J. 2004 Oct 1;23(19):3836-43

* S. Dhe-Paganon, E.D. Werner, M. Nishi, L. Hansen, Y.-I. Chi, S.E. Shoelson. (2004) A phenylalanine zipper mediates APS dimerization.  Nature Structural and Molecular Biology 11:968-974

* M. Nollmann, J. He, O. Byron, W.M. Stark. (2004) Solution structure of the Tn3 resolvase-crossover site synaptic complex. Molecular Cell 16:127-137

* A. Y. Lee, C.-H. Hsu, S.-H. Wu. (2004) Functional domains of Brevibacillus thermoruber lon protease for oligomerization and DNA binding.  Journal of Biological Chemistry 279:34903-34912

* C. Moldes, J.L. Garcia, P. Garcia. (2004) Construction of a chimeric thermostable pyrophosphatase to facilitate its purification adn immobilization by using the choline-binding tag.  Applied and Environmental Microbiology 70:4642-4647

* I. Dimitrov, H. Kukula, H. Colfen, H. Schlaad. (2004) Advances in the synthesis and characterization of polypeptide-based hybrid block copolymers.  Macromolecular Symposia 215:383-393

* S.N. Hicks, R.E. Smiley, L.G. Stinnett, K.H. Minor, E.E. Howell. (2004) Role of lys-32 residues in R67 dihydrofolate reductase probed by asymmetric mutations.  Journal of Biological Chemistry 279:48996-47002

* M. Balsera, M. Menendez, J.L. Saiz, J. de las Rivas, J.M. Andreu, J.B. Arellano. (2004)  Structural stability of the PsbQ protein of higher plant photosystem II.  Biochemistry 43:14171-14179

* W.F. Stafford, M.L. Walker, J. Trinick, L.M. Coluccio. (2004) Mammalian class I myosin, Myo1b, is monomeric and crosslinks actin filaments as determined by hydrodynamic studies and electron microscopy.  Biophysical Journal (Epub ahead of print)

* C. Brockmann, A. Diehl, K. Rehbein, H. Strauss, P. Schmieder, B. Korn, R. Kuehne, H. Oschkinat. (2004) The oxidized subunit B8 from human complex I adopts a thioredoxin fold.  Structure 12: 1645-1654

* A.T. Mackey, L.R. Sproul, C.A. Sontag, L.L. Satterwhite, J.J. Correia, S.P. Gilbert. (2004) Mechanistic analysis of the saccharomyces cerevisiae kinesin Kar3. Journal of Biological Chemistry 279:51354-51361

* T. Beddoe, S.R. Bushell, M.A. Perugini, T. Lithgow, T.D. Mulhern, S.P. Bottomley, J. Rossjohn. (2004) A biophysical analysis of the tetratricopoptide repeat-rich mitochondrial import receptor, Tom70, reveals an elongated monomer that is inherently flexible, unstable, and undolds via a multistate pathway.  Journal of Biological Chemistry 279: 46448-46454

* I.J. Turner, D.J. Scott, S. Allen, C.J. Roberts, P. Soultanas. (2004) The bacillus subtilis DnaD protein: a putatitve link between DNA remodeling and initiation of DNA replication.  FEBS Letters 577:460-464

* M. Gabrielsen, C.S. Bond, I. Hallyburton, S. Hecht, A. Bacher, W. Eisenreich, F. Rohdich, W.N. Hunter. (2004) Hexameric assembly of the bifunctional mthylerythritol 2,4-cyclodiphosphate synthase adn protein-protein associations in the deoxy-xylulose-dependent pathway of isoprenoid precursor biosynthesis.  Journal of Biological Chemistry 279:52753-52761

* C. Birck, L. Damian, C. Marty-Detraves, A. Lougarre, C. Schulze-Briese, P. Koehl, D. Fournier, L. Paquereau, J.-P. Samama (2004) A new lectin family with structure similarity to actinoporins revealed by the crystal structure of Xerocomus chrysenteron lectin XCL.  Journal of Molecular Biology 344:1409-1420

* A. Turkan, Y. Hiromasa, T.E. Roche. (2004) Formation of a complex of the catalytic subunit of pyruvate dehydrogenase phosphatase isoform 1 (PDP1c) and the L2 domain forms a Ca2+ binding site and captures PD1c as a monomer.  Biochemistry 43:15073-15085

* A. Tsuneshige, K. Kanaori, U. Samuni, D. Danstker, J.M. Friedman, S. Neya, L. Giangiacomo, T. Yonetani (2004) Semihemoglobins, high oxygen affinity dimeric forms of human hemoglobin respond efficiently to allosteric effectors without forming tetramers.  Journal of Biological Chemistry 279:48959-48967

* C.Y. Chou, H.C. Chang, W.C. Hsu, T.Z. Lin, C.H. Lin, and G.G. Chang (2004) Quaternary Structure of the severe acute respiratory syndrome (SARS) coronavirus main protease. Biochemistry 43:14958-14970

* C.Y. Chou, Y.L. Lin, Y.C. Huang, S.Y. Sheu, T.H. Lin, H.J. Tsay, G.G. Chang, and M.S. Shiao (2005) Structural variation in human apolipoprotein E3 and E4: secondary structure, tertiary structure, and size distribution. Biophys. J. paper in press

* C.H. Chien, L.H. Huang, C.Y. Chou, Y.S. Chen, Y.S. Han, G.G. Chang, P.H. Liang, and X. Chen (2004) One site mutation distrupts dimer formation in human DPP-IV proteins. Journal of Biological Chemistry 279:52338-52345

* J. Koetz, J. Bahnemann, G. Lucas, B. Tiersch, S. Kosmella. (2004) Polyelectrolyte-modified microemulsions as new templates for the formation of nanoparticles.  Colloids and Surfaces A: Physicochemical and Engineering Aspects 250:423-430

* H.H. Low, M.C. Moncrieffe, J. Loewe (2004) The crystal structure of ZapA and its modulation of FtsZ polymerisation.  Journal of Molecular Biology 341:839-852

*  Y. Gohon, G. Pavlov, P. Timmins, C. Tribet, J.L. Popot, C. Ebel. (2004) Partial specific volume and solvent interactions of amphipol A8-35. Analytical Biochemistry 334:318-334

* I.S. Chernik, O.O. Panasenko, Y. Li, S.B. Marston, N.B. Gusev. (2004) pH-induced changes of the structure of small heat shock proteins with molecular mass 24/27 kDa (HspB1).  Biochemical and Biophysical Research Communications 324:1199-1203

* Almog R, Maley F, Maley GF, MacColl R, Van Roey P (2004) Three-dimensional structure of the R115E mutant of T4-bacteriophage 2 '-deoxycytidylate deaminase.  Biochemistry 43:13715-13723

* A.L. Burd, R.H. Ingraham, S.e. Goldrick, R.R. Kroe, J.J. Crute, C.A. Gyron (2004) Assembly of major histocompatibility complex (MHC) class II transcription factors: Association and promoter recognition of RFX proteins.  Biochemistry 43:12750-12760

* M. Maheswaran, C. Urbanke, K. Forchhammer. (2004) Complex formation and catalytic activation by the P-II signaling protein of N-acetyl-L-glutamate kinase from Synechococcus elongatus strain PCC 7942.  Journal of Biological Chemistry, Papers in Press

* M.S. Kelker, T.R. Foss, W. Peti, L. Teyton, J.W. Kelly, K. Wuthrich, I.A. Wilson. (2004) Crystal structure of human triggering receptor expressed on myeloid cells 1 (TREM-1) at 1.47 angstrom.  Journal of Molecular Biology 342:1237-1248

* S.R. Collins, A. Douglass, R.D. Vale, J.S. Weissman. (2004) Mechanism of prion propagation: Amyloid growth occurs by monomer addition.  PLosS Biology 2(10):e321

* R. Zhang, P. Somasundaran. (2004) Abnormal micellar growth in sugar-based and ethoxylated nonionic surfactants and their mixtures in dilute regimes using analytical ultracentrifugation.  Langmuir 20:8552-8558

* G. Mayer, V. Vogel, B.G.G. Lohmeijer, J.F. Gohy, J.A. Van den Broek, W. Haase, U.S. Schubert, D. Schubert. (2004) Metallo-supramolecular block copolymer micelles:  Improved preparation and characterization.  Journal of Polymer Science Part A - Polymer Chemistry

* C.M. Yu, G.G. Chang, H.C. Chang, S.H. Chiou. (2004) Cloning and characterization of a thermostable catfish alpha b-crystallin with chaperone-like activity at high temperatures.  Experimental Eye Research 79:249-261

* B. Elleby, S. Svensson, X.Q. Wu, K. Stefansson, J. Nilsson, D. Hallen, U. Oppermann, L. Abrahamsen. (2004) High-level production and optimization of monodispersity of 11 beta-hydroxysteroid dehydrogenase type 1.  Biochimica et Biophysica Acta 1700:199-207

* P.-K. Lu, S.-Y. Chien, J.-Y. Tsai, C.-T. Fong, M.J. Lee, H. Huang, Y.-J. Sun. (2004) Crystallization and preliminary x-ray diffraction analysis of spermidine synthase from helicobacter pylori.  Acta Crystallographica Section D 60:2067-2069

* F. Bou-Abdallah, S. Adinolfi, A. Pastore, T.M. Laue, N.D. Chasteen. (2004) Iron binding and oxidation kinetics in frataxin CyaY of Escherichia coli.  Journal of Molecular Biology 341:605-615

* M.-C. Lo, A. Aulabaugh, G. Krishanmurthy, J. Kaplan, A. Zask, R.P. Smith, G. Ellestad. (2004) Probing the interaction of HTI-286 with tubulin using a stilbene analogue.  Journal of the American Chemical Society 126:9898-9999

* W. Hosia, N. Bark, E. Liepinsh, A. Tjernberg, B. Persson, D. Hallen, J. Thyberg, J. Johansson, L. Tjernberg. (2004) Folding into a beta-hairpin can prevent amyloid fibril formation.  Biochemistry 43:4655-4661

* C.G. Noble, P.A. Walker, L.J. Calder, I.A. Taylor. (2004) Rna14-Rna15 assembly mediates the RNA-binding capability of Saccharomyces cerevisiae cleavage factor IA.  Nucleic Acid Research 32:3364-3375

* J.A. Caryl, M.C.A. Smith, C.D. Thomas (2004)  Reconstitution of a staphylococcal plasmid-protein relaxation complex in vitro.  Journal of Bacteriology 186:3374-3383

* A.M. Giannetti, P.J. Bjorkman. (2004) HFE and transferrin directly compete for transferring receptor in solution and at the cell surface.  Journal of Biological Chemistry 279:25866-25875

* D. Madern, G. Zaccai. (2004) Molecular adaptation: the malate dehydrogenase from the extreme halophilic bacterium Salinibacter ruber behaves like a non-halophilic protein. Biochimie 86:295-303

* C.M. Eakin, F.J. Attenello, C.J. Morgan, A.D. Miranker. (2004) Oligomeric assembly of native-like precursors precedes amyloid formation by bet-2 microglobulin.  Biochemistry 43:7808-7815

* W.C. Hsu, H.C. Hung, L. Tong, G.G. Chang. (2004) Dual functional roles of ATP in the human mitochondrial malic enzyme.  Biochemistry 43:7382-7390

* S. Basak, S. Polley, M. Basu, D. Chattopadhyay, S. Roy. (2004) Monomer and dimer of Chandipura virus unphosphorylated P-protein binds leader RNA differently: Implications for viral RNA synthesis.  Journal of Molecular Biology 339:1089-1101

* N.J. Harmer, L.L. Ilag, B. Mulloy, L. Pellegrini, C.V. Robinson, T.I. Blundell. (2004) Towards a resolution of the stoichiometry of the fibroblast growth factor (FGF)-FGIF receptor - heparin complex.  Journal of Molecular Biology 339:821-834

* Y.H. Chen, T.C. Chang, G.G. Chang. (2004) Functional expression, purification and characterization of the extra stable human placental alkaline phosphatase in the Pichia pastoris system.  Protein Expression and Purification 36:90-99

* A.S. Solovyova, M. Nollmann, T.J. Mitchell, O. Byron.  (2004) The solution structure and oligomerization behavior of two bacterial toxins: Pneumolysin and perfringolyson O.  Biophysical Journal 87:540-552

* M.J. Dubin, P.H. Stokes, E.Y.M. Sum, R.S. Williams, V.A. Valova, P.J. Robinson, G.J. Lindeman, J.N.M. Glover, J.e. Visvader, J.M. Matthews.  (2004)  Dimerization of CtIP, a BRCA1- and CtBP-interacting protein, is mediated by an N-terminal coiled-coil motif.  Journal of Biological Chemistry 279:26932-26938

* A.P. West, A.B. Herr, P.J. Bjorkman. (2004) The chicken yolk sac IgY receptor, a functional equivalent of the mammalian MHC-related Fc receptor, is a phospholipase A(2) receptor homolog.  Immunity 20:601-610

* A. Irimia, D. Madern, G. Zaccai, F.M. Vellieux. (2004) Methanoarchaeal sulfoactate dehydrogenase: prototype of a new family of NADH-dependent enzymes.  EMBO Journal 23:1234-1244

* P.B. Furtado, P.W. Whitty, A. Robertson, J.T. Eaton, A. Almogren, M.A. Kerr, J.M. Woof, S.J. Perkins. (2004) Solution structure determination of monomeric human IgA2 by x-ray and neutron scattering, analytical ultracentrifugation and constrained modeling: a comparison with monomeric human IgA1.  Journal of Molecular Biology 338:921-941

* D. Snyder, J. Lary, P. Gollnick, Cole JL. (2004) Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP.  Journal of Molecular Biology 338:669-682

* S.M. Doyle, E. Anderson, K.N. Parent, C.M. Teschke. (2004) A concerted mechanism for the suppression of a folding defect through interactions with chaperones.  Journal of Biological Chemistry 279:17473-17482

* A. Bootz, V. Vogel, D. Schubert, J. Kreuter. (2004) Comparison of scanning electron microscopy, dynamic light scattering and analytical ultracentrifugation for the sizing of poly(butyl cyanoacrylate) nanoparticles.  European Journal of Pharmaceutics and Biopharmaceutics 57:369-375

* C. Ziegler, S. Morbach, D. Schiller, R. Kramer, C. Tziatizos, D. Schubert, W. Kuhlbrandt.  (2004) Projection structure and oligomeric state of the osmoregulated sodium/glycine betaine symporter BetP of Corynebacterium glutamicum.  Journal of Molecular Biology 337:1137-1147

* M. Nollmann, W.M. Stark, O. Byron. (2004) Low-resolution reconstruction of a synthetic DNA Holliday junction.  Biophysical Journal 86:3060-3069

* A. Sturdy, R. Naseem, M. Webb. (2004) Purification and characterization of a soluble N-terminal fragment of the breast cancer susceptibility protein BRCA1. Journal of Molecular Biology 340:469-475

* F. Devred, P. Barbier, S. Douillard, O. Monasterio, J.M. Andreu, V. Peyrot. (2004) Tau induces ring and microtubule formation from alpha-beta tubulin dimers under nonassembly conditions. Biochemistry 43:10520-10531

* M. Muchova, R.J. Lewis, D. Perecko, J.A. Brannigan, J.C. Ladds, A. Leech, A.J. Wilkinson, I. Barak.  (2004) Dimer-induced signal propagation in Spo0A.  Molecular Microbiology 53:829-842

* S.C. Sinha, B.N. Chaudhuri, J.W. Burgner, G. Yakovleva, V.J. Davisson, J.L. Smith. (2004) Crystal structure of imidazole glycerol-phosphate dehydratase - Duplication of an unusual fold.  Journal of Biological Chemistry 279:15491-15498

* E.R. Sprague, W.L. Martin, P.J. Bjorkman. (2004) pH dependence and stoichiometry of binding of the Fc region of IgG by the herpes simplex virus Fc receptor gE-gI.  Journal of Biological Chemistry 279:14184-14193

* A.J. Davis, M.A. Perugini, B.J. Smith, J.D. Stewart, T. Ilg, A.N. Holder, E. Handman. (2004) Properties of GDP-mannose pyrophosphorylase, a critical enzyme and drug target in Leishmania mexicana.  Journal of Biological Chemistry 279:12462-12468

* J.C.D. Houtman, Y. Higashimoto, N. Dimasi, S. Cho, H. Yamaguchi, B. Bowden, C. Regan, E.L. Malichiodi, R. Mariuzza, P. Schuck, E. Appella, L.E. Samelson (2004) Binding specificity of multi-protein signaling complexes is determined by both cooperative interactions and affinity preferences.  Biochemistry 43:4170-2178

* J.S. Philo, T.-H. Yang, M. LaBarre. (2004) Re-examining the oligomerization state of macrophage migration inhibitory factor (MIF) in solution.  Biophysical Chemistry 108:77-87

* M. Smolle, R.T. Hay, O. Byron (2004) Hydrodynamic bead modelling of the 2:1 p50-I kappa B gamma complex.  Biophyiscal Chemistry 108:259-271

* M. Hedl, V.W. Rodwell. (2004) Enterococcus faecalis mevalonate kinase.  Protein Science 13:687-693

* C. de Antonio, M.E. Farias, M.G. de Lacoba, M. Espinosa. (2004) Features of the plasmid pMV158-encoded MobM, a protein involved in its mobilization.  Journal of Molecular Biology 335:733-743

* P. Neudecker, J. Nerkamp, A. Eisenmann, A. Nourse, T. Lauber, K. Schweimer, K. Lehmann, S. Schwarzinger, F. Ferreira, P. Rosch. (2004) Solution structure, dynamics, and hydrodynamics of the calcium-bound cross-reactive birch pollen allergen Bet v 4 reveal a canonical monomeric two EF-hand assembly with a regulatory function.  Journal of Molecular Biology 336:1141-1157

* R.J. Center, J. Lebowitz, R.D. Leapman, B. Moss. (2004) Promoting trimerization of soluble human immunodeficiency virus type 1 (HIV-1) Env through the use of HIV-1/simian immunodeficiency virus chimeras. Journal of Virology 78:2265-2276

* C.A. Brautigam, Y. Chelliah, J. Deisenhofer. (2004) Tetramerization and ATP binding by a protein comprising the A, B, and C domains of rat synapsin I.  Journal of Biological Chemistry 279:11948-11956

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* C.M. Khursigara, G. De Crescenzo, P.D. Pawalek, J.W. Coulton.  (2003) Enhanced binding of TonB to a ligand-loaded outer membrane receptor: Role of the oligomeric state of TonB in formation of a functional FhuA-TonB complex.  Journal of Biological Chemistry, 279(9):7405-7412

* J. Dam, R. Guan, K. Natarajan, N. Dimasi, L.K. Chlewicki, D.M. Kranz, P. Schuck, D.H. Margulies, R.A. Mariuzza. (2003) Variable MHC class I engagement by Ly49 NK cell receptors revealed by the crystal structure of Ly49C bound to H-2KbNature Immunology (Published online: 2 November 2003, doi:10.1038/ni1006)

* E. Delagoutte, P.H. von Hippel. (2003) Function and assembly of the bacteriophage T4 DNA replication complex.  Journal of Biological Chemistry 278:25435-25447

* L.J. Su, M. Brenowitz, A.M. Pyle. (2003) An alternative route for the folding of large RNAs: Apparent two-state folding by a group II intron ribozyme.  Journal of Molecular Biology 334:639-652

* A.J. Callaghan, J.G. Grossman, Y.U. redko, L.L. Ilag, M.C. Moncrieffe, M.F. Symmons, C.V. Robinson, K.J. McDowall, B.F. Luisi (2003) Quaternary structure and catalytic activity of the escherichia coli ribonuclease E amino-terminal catalytic domain.  Biochemistry 42:13848-13855

* X. Trivelli, I. Krimm, C. Ebel, L. Verdoucq, V. Prouzet-Mauleon, Y. Chartier, P. Tsan, G. Lauquin, Y. Meyer, J.-M. Lancelin.  (2003) Characterization of the yeast peroxiredoxin Ahp1 in its reduced active and overoxidized inactive forms using NMR.  Biochemistry 42:14139-14149

* D.E. Wakeham, C.-Y. Chen, B. Greene, P.K. Hwang, F.M. Brodsky. (2003) Clathrin self-assembly involves coordinated weak interactions favorable for cellular regulation.  EMBO Journal 22:4980-4990

* S. Svensson, T. Ostberg, M. Jacobsson, C. Norstrom, K. Stefansson, D. Hallen, I.C. Johansson, K. Zachrisson, D. Ogg, L. Jendeberg. (2003) Crystal structure of the heterodimeric complex of LXRa and RXRb ligand-binding domains in a fully agonistic conformation.  EMBO Journal 22:4625-4633

* I. Dimitrov, H. Schlaad. (2003) Synthesis of nearly monodisperse polystyrene-polypeptide block copolymers via polymerization of n-carboxyanhydrides.  Chemical Communications 2003, 2944-2945

* M. Wolf, A. Eberhart, H. Glossmann, J. Striessnig, N Grigorieff. (2003) Visualization of the domain structure of an L-type Ca(2+) channel using electron cryo-microscopy.  Journal of Molecular Biology 332:171-182

* J.R. Roper, M.A.J. Ferguson. (2003) Cloning and characterisation of the UDP-glucose 4'-epimerase of trypasonoma cruzi.  Molecular & Biochemical Pharmacology 132:47-53

* D. Madern, X. Cai, M.S. Abrahamsen, G. Zhu. (2003) Evolution of Cryptosporidium parvum lactate dehydrogenase from malatate deydrogenase by a very recent event of gene duplication.  Molecular Biology and Evolution 21:489-497

* G. Krishnamurthy, W. Cheng, M.C. Lo, A. Aulabaugh, V. Razinkov, W.D. Ding, F. Loganzo, A. Zask, G. Ellestad (2003) Biophysical characterization of the interactions of HTI-286 with tubulin heterodimer and microtubules.  Biochemistry 42: 13484-13495

* A. Nourse, M. Trabi, N.L. Daly, D.J. Craig (2003) A comparison of the self-association behavior of the plant cyclotides kalata B1 and kalata B2 via analytical ultracentrifugation.  Journal of Biological Chemistry (Epub ahead of print)

* R. Rashid, M. Aittaleb, Q. Chen, K. Spiegel, B. Demeler, H. Li. (2003) Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles.  Journal of Molecular Biology 333:295-306

* V. Vogel, J.F. Gohy, B.G.G. Lohmeijer, J.A. Van den Broek, W. Haase, U.S. Schubert, D. Schubert. (2003) Metallo-supramolecular micelles: Studies by analytical ultracentrifugation and electron microscopy.  Journal of Polymer Science Part A - Polymer Chemistry 41: 3159-3168

* A.S. Solovyova, N. Meenan, L. McDermott, A. Garofalo, J.E. Bradley, M.W. Kennedy, O. Byron.  (2003) The polyprotein and FAR lipid binding proteins of nematodes: shape and monomer/dimer states in ligand-free and bound forms.  European Biophysics Journal 32:465-476

* S.M. Doyle, E. Anderson, D. Zhu, E.H. Braswell, C.M. Teschke. (2003) Rapid unfolding of a domain populates an aggregation-prone intermediate that can be recognized by GroEL.  Journal of Molecular Biology 332:937-951

* A. Hawrani, C.E. Dempsey, M.J. Banfield, D.J. Scott, A.R. Clarke, and B. Kenny. (2003) Effect of protein kinase A-mediated phosphorylation on the structure and association properties of the enteropathogenic Escherichia coli Tir virulence protein.  Journal of Biological Chemistry 278:25839-25846

* H. Cölfen, and A. H. Völkel. (2003) Hybrid colloid analysis combining analytical ultracentrifugation and flow-field flow fractionation.  European Biophysics Journal 32:432-436

* D.A. Calarese, C.H. Scanlan, M.B. Zwick, S. Deechongkit, Y. Mimura, R. Kunert, P. Zhu, M.R. Wormald, R.L. Stanfield, K.H. Roux, J.W. Kelly, P.M. Rudd, R.A. Dwek, H. Katinger, D.R. Burton, and I.A. Wilson. (2003) Antibody domain exchange is an immunological solution to carbohydrate cluster recognition.  Science 300:2065-2071 

* M. Donepudi, A. Mac Sweeney, C. Briand, M.G. Grütter (2003) Insights into the regulatory mechanism for caspase-8 activation.  Molecular Cell 11:543-549

* A.H. Merry, R.J. Gilbert, D.A. Shore, L. Royle, O. Miroshnychenko, M. Vuong, M.R. Wormald, D.J. Harvey, R.A. Dwek, B.J. Classon, P.M. Rudd, S.J. Davis. (2003) O-glycan sialylation and the structure of the stalk-like region of the T cell co-receptor CD8.  Journal of Biological Chemistry 278:27119-27128

* V. De Marco, A. de Marco, K.N. Goldie, J.J. Correia, A. Hoenger. (2003) Dimerization properties of a Xenopus laevis kinesin-II carboxy-terminal stalk fragment.  EMBO reports 4:717-722

* A.B. Herr, C.L. White, C. Milburn, C. Wu, and P.J. Bjorkman.  (2003) Bivalent binding of IgA1 to FcaRI suggests a mechanism for cytokine activation of IgA phagocytosis.  Journal of Molecular Biology 327:645-657

* S. Schrage, R. Sigel, and H. Schlaad.  (2003) Formation of amphiphilic polyion complex vesicles from mixtures of oppositely charged block ionomers.  Macromolecules 36:1417-1420

* B.C.C. Pessela, C. Mateo, A.V. Carrascosa, A. Vian, J.L. Garcia, G. Rivas, C. Alfonso, J.M. Guisan, and R. Fernández-Lafuente.  (2003) One-step purification, covalent immobilization and additional stabilization of a thermophilic poly-His-tagged beta-galactosidase from Thermus sp strain T2 by using novel heterofunctional chelate-epoxy sepabeads. Biomacromolecules 4:107-113

* E. Anderson, C.M. Teschke (2003) Folding of phage P22 coat protein monomers: kinetic and thermodynamic properties.  Virology 313:184-197

* H.C. Chang, and G.G. Chang (2003) Involvement of single residue tryptophan-548 in the quaternary structural stability of pigeon cytosolic malic enzyme.  Journal of Biological Chemistry 278:23996-24002

* H.C. Hung, Y-H. Chen, G.-Y. Liu, H-J. Lee, and G-G. Chang. (2003)  Equilibrium protein folding-unfolding process involving multiple intermediates  Bulletin of Mathematical Biology 65:553-570

* S.A. Ali, N. Iwabuchi, T. Matsui, K. Hirota, S. Kidokoro, M. Arai, K. Kuwajima, P. Schuck, F. Arisaka.  (2003) Reversible and fast association equilibrium of a molecular chaperone, gp57a, of bacteriophage T4.  Biophysical Journal 85:2606-2618

* J. Braunstein, S. Brutsaert, R. Olson, C. Schindler (2003)  STATs dimerize in the absence of phosphorylation.  Journal of Biological Chemistry 278:34133-34140

* S. Angelaccio, R. Chiaraluce, V. Consalvi, B. Buchenau, L. Giangiacomo, F. Bossa, R. Contestabile. (2003) Catalytic and thermodynamic properties of tetrahydromethanopterin-dependent serine hydroxymethyltransferase from Methanococcus jannaschii.  Journal of Biological Chemistry 278:41789-41797

* C. Tziatzios, D. Schubert, P. Schuck, C.R.D. Lancaster, R.B. Gennis, B. Barquera.  (2003) The state of association of the Na+ - translocating NADH: quionon oxidoreductase in detergent solution.  An ultracentrifugation study.  Journal of Colloid and Polymer Science (in press)

* M.J. Rosovitz, P. Schuck, M. Varughese, A.P. Chopra, Y. Singh, L.J. McGinnis, and S.H. Leppla.  (2003) Alanine scanning mutations in anthrax toxin protective antigen domain 4 reveal residues important for binding to the cellular receptor and to a neutralizing monoclonal antibody. Journal of Biological Chemistry (papers in press)

* S. Savvides, H.J. Yeo, M.R. Beck, F. Blaesing, R. Lurz, E. Lanka, R. Buhrdorf, W. Fischer, R. Haas, and G. Waksman.  (2003) VirB11 ATPases are dynamic hexameric assemblies: new insights into bacterial type IV secretion.  EMBO Journal 22:1969-1980

* L. E. Daniels, K.M. Wood, D.J. Scott, S.E. Halford.  (2003) Subunit assembly for DNA cleavage by restriction endonuclease SgrAI.  Journal of Molecular Biology 327:579-591

* C.H. Charles, G.X. Luo, L.A. Kohlstaedt, I.G. Morantte, E. Gorfain, L. Cao, J.H. Williams, F. Fang. (2003) Prevention of human rhinovirus infection by multivalent Fab molecules directed against ICAM-1.  Antimicrobial Agents and Chemotherapy 47:1503-1508

* D. Deriu, C. Briand, E. Misiniene, V. Naktinis, M.G. Grutter. (2003) Structure and oligomeric state of the mammalian tumour-associated antigen UK114.  Acta Crystallographica D59:1676-1678

* S. Bernocco, B.M. Steiglitz, D.I. Svergun, M.V. Petoukhov, F. Ruggiero, S. Ricard-Blum, C. Ebel, C. Geourjon, G. Deléage, B. Font, D. Eichenberger, D.S. Greenspan, and D.S. Hulmes.  (2003) Low resolution structure determination shows procollagen c-proteinase enhancer to be an elongated multi-domain glycoprotein.  Journal of Biological Chemisty 278:7199-7205

* J. Benach, Y.-T. Chou, J.J. Fak, A. Itkin, D.D. Nicolae, P.C. Smith, G. Wittrock, D.L. Floyd, C.M. Golsaz, L.M. Gierasch and J.F. Hunt. (2003) Phospholipid-induced monomerization and signal-peptide-induced oligomerization of SecA.  Journal of Biological Chemistry 278:3628-3638

* S. DeBonis, J.-P. Simorre, I. Greve, L. Lebeau, D.A. Skoufias, A. Blangy, C. Ebel, P. Gans, R. Cross, D.D. Hackney, R.H. Wade and F. Kozielsky.  (2003) Interaction of the mitotic inhibitor monastrol with human kinesin Eg5.  Biochemistry 42, 338-349

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* G.L. Devlin, M.K.M. Chow, G.J. Howlett, S.P. Bottomley. (2002) Acid denaturation of a1-antitrypsin: Characterization of a novel mechanism of serpin polymerization.  Journal of Molecular Biology 324:859-870

* M. Suurkuusk and D. Hallén. (2002) Investigation of guanidine hydrochloride induced unfolding of apolipoprotein A-IMilano Spectroscopy 16:199-206

* J.A. Durant, C. Chen, T.M. Laue, T.P. Moody, S.A. Allison. (2002) Use of T4 lysozyme charge mutants to examine electrophoretic models.  Biophysical Chemistry 101-102:593-609

* T. Lauber, A. Nourse, A. Schulz, and U.C. Marx.  (2002) Native and recombinant proguanylin feature identical biophysical properties and are monomeric in solution.  Biochemistry 41:14602-14612

* P. Labonte, V. Axelrod, A. Agarwal, A. Aulabaugh, A. Amin, and P. Mak. (2002) Modulation of hepatitis C virus RNA-dependent RNA polymerase activity by structure-based site-directed mutagenesis.  Journal of Biological Chemistry 277:38838-38846

* J.-H. Liao, J.-S. Lee, and S.-H. Chiou.  (2002) C-terminal lysine truncation increases thermostability and enhances chaperone-like function of porcine aB-crystallin.  Biochemical and Biophysical Research Communications 297:309-316

* D. Josse, C. Ebel, D. Stroebel, A. Fontaine, F. Borges, A. Echalier, D. Baud, F. Renault, M. leMaire, E. Chabrieres, and P. Masson.  (2002) Oligomeric states of the detergent-solubilized human serum paraoxonase (PON1). Journal of Biological Chemistry 277:33386-33397

* H. Strauss, R. Misselwitz, D. Labudde, S. Nicklisch, K. Baier. (2002) NbIA from Anabaena sp. PCC 7120 is a mostly a-helical protein undergoing reversible trimerization in solution.  European Journal of Biochemistry 269:4617-4624 

* M.A. Perugini, P. Schuck, G.J. Howlett. (2002) Differences in the binding capacity of human apolipoprotein E3 and E4 to fractionated lipid emulsions. European Journal of Biochemistry 269:5939-5949

* A. Sutherlin, M. Hedl, B. Sanchez-Neri, J.W. Burgner, II, C.V. Stauffacher, and V.W.Rodwell. (2002) Enterococcus faecalis 3-hydroxy-3-methylglutaryl coenzyme A synthase, an enzyme of isopentenyl diphosphate biosynthesis. Journal of Bacteriology 2002 184: 4065-4070

* Z.F. Taraporewala, P. Schuck, R.F. Ramig, J.T. Patton. (2002) Analysis of rotavirus temperature-sensitive mutant indicates that NSP2 octamers are the functional form of the protein.  Journal of Virology 76:7082-7093

* M.J. Kornblatt, S.-X. Zheng, N. Lamande, M. Lazar. (2002) Cloning, expression and mutagenesis of a subunit contact of rabbit muscle-specific (bb) enolase.  Biochimica et Biophysica Acta 1597:311-319

* D.J. Scott, J.G. Grossmann, J.R.H. Tame, O. Byron, K.S. Wilson, B.R. Otto. (2002) Low resolution structure of the Apo Form of Escherichia coli haemoglobin protease Hbp. Journal of Molecular Biology 315:1179-1187

* J. Arthos, C. Cicala, T.D. Steenbeke, D. VanRyk, C. Dela Cruz, P. Khazanie, S.M. Selig, D.B. Hanback, D. Nam, P. Schuck, T.-W. Chun, M. Chaikin, A.S. Fauci.  (2002) Efficient inhibition of HIV-1 viral replication by a novel modification of sCD4. Journal of Biological Chemistry 277:11456-11464.

* H.-C. Chang, W.-Y. Chou, G.-G. Chang. (2002) Effect of metal binding on the structural stability of pigeon liver malic enzyme.  Journal of Biological Chemistry 277:4663-4671

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* S.P. Lee, E. Furior, M.S. Lewis, M.K. Han.  (2001) Analytical ultracentrifugation studies of translin:  Analysis of protein-DNA interactions using a single-stranded fluorogenic oligonucleotide.  Biochemistry 40:14081-14088

* M. Lacroix, C. Ebel, J. Kardos, J. Dobo, P. Gal, P. Zavodszky, G.J. Arlaud, N.M. Thielens (2001) Assembly and enzymatic properties of the catalytic domain of human complement protease C1r.  Journal of Biological Chemistry 276:36233-36240 

* D.M Hatters, R.A. Lindner, J.A. Carver, G.J. Howlett (2001) The molecular chaperone, a-crystallin, inhibits amyloid formation by apolipoprotein C-II.  Journal of Biological Chemistry 276:33755-33761

* S. Tarabykina, D.J. Scott, P. Herzyk, T.J. Hill, J.R.H. Tame, M. Kriajevska, D. Lafitte, P.J. Derrick, G.G. Dodson, N.J. Maitland, E.M. Lukanidin, I.B. Bronstein (2001) The dimerization interface of the metastasis-associated protein S100A4 (Mts1).  Journal of Biological Chemistry 276:24212-24222

* Hatters DM, Wilson L, Atcliffe BW, Mulhern TD, Guzzo-Pernell N, Howlett GJ (2001) Sedimentation analysis of novel DNA structures formed by homo-oligonucleotides.  Biophysical Journal 81:371-381

* Buisson M, Valette E, Hernandez JF, Baudin F, Ebel C, Morand P, Seigneurin JM, Arlaud GJ, Ruigrok RWH (2001) Functional determinants of the Epstein-Barr virus protease. Journal of Molecular Biology 311:217-228

* J.L. Cole, V.M. Garsky (2001) Thermodynamics of peptide inhibitor binding to HIV-1 gp41.  Biochemistry 40:5633-5641

* M. Sedlák, H. Cölfen (2001) Synthesis of couble-hydrophilic block copolymers with hydrophobic moieties for the controlled crystallization of minerals.  Macromolecular Chemistry and Physics 202:587-597

* P. Schuck, Z. Taraporewala, P. McPhie, J.T. Patton (2001) Rotavirus nonstructural protein NSP2 self-assembles into octamers that undergo ligand-induced conformational changes. Journal of Biological Chemistry 267:9679-9687.  

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* S.R. Kar, J.S. Kinsbury, M.S. Lewis, T.M. Laue, and P. Schuck (2000) Analysis of transport experiments using pseudo-absorbance data. Analytical Biochemistry 285:135-142.  

* M.A. Perugini, P. Schuck, G.J. Howlett (2000) Self-association of human apolipoprotein E3 and E4 in the presence and absence of phospholipid. Journal of Biological Chemistry 275:36758-36765

 

    publications using ls-g*(s), discrete Lamm eq. solutions, van Holde-Weischet, DLS analysis and/or other models of sedfit

Inngjerdingen KT, Patel TR, Chen XY, et al.
Immunological and structural properties of a pectic polymer from Glinus oppositifolius 
GLYCOBIOLOGY 17 (12): 1299-1310 DEC 2007

Serrano-Heras G, Ruiz-Maso JA, del Solar G, et al.
Protein p56 from the Bacillus subtilis phage phi 29 inhibits DNA-binding ability of uracil-DNA glycosylase 
NUCLEIC ACIDS RESEARCH 35 (16): 5393-5401 AUG 2007

Patel TR, Harding SE, Ebringerova A, et al.
Weak self-association in a carbohydrate system 
BIOPHYSICAL JOURNAL 93 (3): 741-749 AUG 2007

Sjekloca L, Pudas R, Sjoblom B, et al.
Crystal structure of human filamin C domain 23 and small angle scattering model for filamin C 23-24 dimer 
JOURNAL OF MOLECULAR BIOLOGY 368 (4): 1011-1023 MAY 11 2007

Ellisdon AM, Pearce MC, Bottomley SP
Mechanisms of ataxin-3 misfolding and fibril formation: Kinetic analysis of a disease-associated polyglutamine protein 
JOURNAL OF MOLECULAR BIOLOGY 368 (2): 595-605 APR 27 2007

Richter CD, Stanmore DA, Miguel RN, et al.
Autonomous folding of interdomain regions of a modular polyketide synthase 
FEBS JOURNAL 274 (9): 2196-2209 MAY 2007

Fernando H, Davydov DR, Chin CC, et al.
Role of subunit interactions in P450 oligomers in the loss of homotropic cooperativity in the cytochrome P450 3A4 mutant L211F/D214E/F304W 
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 460 (1): 129-140 APR 1 2007

Gaskell LJ, Osman F, Gilbert RJ, et al.
Mus81 cleavage of Holliday junctions: a failsafe for processing meiotic recombination intermediates? 
EMBO JOURNAL 26 (7): 1891-1901 APR 4 2007

Powers GA, Pham CLL, Pearce MC, et al.
Serpin acceleration of amyloid fibril formation: A role for accessory proteins 
JOURNAL OF MOLECULAR BIOLOGY 366 (2): 666-676 FEB 16 2007

Kucerka N, Pencer J, Sachs JN, et al.
Curvature effect on the structure of phospholipid bilayers 
LANGMUIR 23 (3): 1292-1299 JAN 30 2007

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Harkiolaki M, Gilbert RJC, Jones EY, et al.
The C-terminal SH3 domain of CRKL as a dynamic dimerization module transiently exposing a nuclear export signal 
STRUCTURE 14 (12): 1741-1753 DEC 2006

Amor-Mahjoub M, Suppini JP, Gomez-Vrielyunck N, et al.
The effect of the hexahistidine-tag in the oligomerization of HSC70 constructs 
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 844 (2): 328-334 DEC 5 2006

Mok YF, Howlett GJ
Sedimentation velocity analysis of amyloid oligomers and fibrils 
METHODS IN ENZYMOLOGY 413: 199-217 2006

Rappl C, Barbier P, Bourgarel-Rey V, et al.
Interaction of 4-arylcoumarin analogues of combretastatins with microtubule network of HBL100 cells and binding to tubulin 
BIOCHEMISTRY 45 (30): 9210-9218 AUG 1 2006

Caston JR, Luque D, Trus BL, et al.
Three-dimensional structure and stoichiometry of Helmintosporium victoriae190S totivirus 
VIROLOGY 347 (2): 323-332 APR 10 2006

* Tester RF, Patel T, Harding SE (2006) Damaged starch characterisation by ultracentrifugation. CARBOHYDRATE RESEARCH 341 (1): 130-137 JAN 16 2006

* Wilson LM, Pham CLL, Jenkins AJ, Wade JD, Hill AF, Perugini MA, Howlett GJ (2006) High density lipoproteins bind A beta and apolipoprotein C-II amyloid fibrils. JOURNAL OF LIPID RESEARCH 47(4): 755-760 APR 2006

* Tadros M, Gonzalez JM, Rivas G, Vicente M, Mingorance J (2006) Activation of the Escherichia coli cell division protein FtsZ by a low-affinity interaction with monovalent cations. FEBS LETTERS 580 (20): 4941-4946 SEP 4 2006

* Hatters DM, Zhong N, Rutenber E, Weisgraber KH (2006) Amino-terminal domain stability mediates apolipoprotein E aggregation into neurotoxic fibrils. JOURNAL OF MOLECULAR BIOLOGY 361 (5):932-944 SEP 1 2006

* Patel TR, Picout DR, Ross-Murphy SB, Harding SE. (2006) Pressure cell assisted solution characterization of galactomannans. 3. Application of analytical ultracentrifugation techniques. Biomacromolecules. 2006 Dec;7(12):3513-20.

* David Wildes, L. Meadow Anderson, Alex Sabogal and Susan Marqusee (2006) Native state energetics of the Src SH2 domain: Evidence for a partially structured state in the denatured ensemble.  Protein Science 15:1769-1779

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* A. Lubbert, V. Castelletto, I.W. Hamley, H. Nuhn, M. Scholl, L. Bourdillon, C. Wandrey, H.A. Klok. (2005) Nonspherical assemblies generated from polystyrene-b-poly-L-lysine) polyelectrolyte block copolymers.  Langmuir 21:6582-6589

* N. Gupta, T.D. Steenbeke, P. Khazanie, N.M. Censoplano, E.A. Chung, C.C. Cruz, M.A. Chaikin, M. Daucher, S. Kottilil, D. Mavilio, P. Schuck, P. Sun, R.L. Rabin, S. Radaev, D. Van Ryk, C. Cicala, J. Arthos, A.S. Fauci. (2005) Targeted lysis of HIV-infected cells by natural killer cells armed and triggered by a recombinant immunoglobulin fusion protein: Implications for immunotherapy.  Virology 332:491-497

* T.P. Moody, J.S. Kingsbury, J.A. Durant, T.J. Wilson, S.F. Chase, T.M. Laue. (2005) Valence and anion binding of bovine ribonuclease A between pH6 and 8.  Analytical Biochemistry 336:243-252

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* L. Giangiacomo, A. Ilari, A. Boffi, V. Morea, E. Chiancone (2004) The truncated oxygen-avid hemoglobin from bacillus subtilis. X-ray structure and ligand binding properties.  Journal of Biological Chemistry (Epub ahead of print)

* Z. Sun, K.B.M. Reid, S.J. Perkins. (2004) The dimeric and trimeric solution structures of the multidomain complement protein properdin by x-ray scattering, analytical ultracentrifugation and constraing modelling.  Journal of Molecular Biology 343:1327-1343

* G. Sutton, E. Fry, L. Carter, S. Sainsbury, T. Walter, J. Nettleship, N. Berrow, R. Owens, R. Gilbert, A. Davidson, S. Siddell, L. Poon, J. Diprose, D. Alderton, M. Walsh, J.M. Grimes, D.I. Stuart. (2004) The nsp9 replicase protein of SARS-coronavirus, structure and functional insights.  Structure 12:341-353

* C.A. MacRaild, C.R. Stewart, Y.F. Mok, M.J. Gunzburg, M.A. Perugini, L.J. Lawrence, V. Tirtaatmadja, J.J. Cooper-White, G.J. Howlett. (2004) Non-fibrillar components of amyloid deposits mediate the self-association and tangling of amyloid fibrils.  Journal of Biological Chemistry 279:21038-21045

* J.A. Ruiz-Maso, C. Lopez-Zumel, M. Menendez, M. Espinosa, G. del Solar. (2004) Structural features of the initiator of replication protein RepB encoded by the promiscuous plasmid pMV158.  Biochimica et biophysica acta - Proteins and Proteomics 1696:113-119

* I.K. MacGregor, A.L. Anderson, T.M. Laue (2004) Fluorescence detection for the XLI analytical ultracentrifuge.  Biophysical Chemistry 108:165-185

* M. Kunkel, S.J. Watowitch. (2004) Biophysical characterization of hepatitis C virus core protein: implications for interactions with the virus and host.  FEBS Letters 557:174-180

* C.M. Khursigara, G. De Crescenzo, P.D. Pawalek, J.W. Coulton.  (2004) Enhanced binding of TonB to a ligand-loaded outer membrane receptor: Role of the oligomeric state of TonB in formation of a functional FhuA-TonB complex.  Journal of Biological Chemistry 279:7405-7412

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* H. Colfen, S. Tirosh, A. Zaban. (2003) Nanocrystal surface structure analysis by analytical ultracentrifugation. Langmuir 19:10654:10659

* T. Díaz-López, M. Lages-Gonzalo, A. Serrano-López, C. Alfonso, G. Rivas, R. Díaz-Orejas, and R. Giraldo. (2003) Structural changes in RepA, a plasmid replication initiator, upon binding to origin DNA. Journal of Biological Chemistry 20:18606-18616

* C.J. Ackerman, M.M. Harnett, W. Harnett, S.M. Kelly, D.I. Svergun, and O. Byron. (2003) 19 A structure of the filarial nematode immunomodulatory protein, ES-62.  Biophysical Journal 84:489-500

* C.A. MacRaild, D.M. Hatters, L.J. Lawrence, G.J. Howlett (2003)  Sedimentation velocity analysis of flexible macromolecules: self-association and tangling of amyloid fibrils.  Biophysical Journal 84:2562-2569

* D. Gell, Y. Kong, S.A. Eaton, M.J. Weiss, and J.P. Mackay. (2003) Biophysical characterization of the a-globin binding protein a-hemoglobin stabilizing protein.  Journal of Biological Chemistry 277:40602-40609

* J.R. Caston, S.A. Ghabrial, D. Jiang, G. Rivas, C. Alfonso, R. Roca, D. Luque, J.L. Carrascosa. (2003) Three-dimensional structure of Pennicillium chrysogenum virus: A double-stranded RNA virus with a genuine T=1 capsid.  Journal of Molecular Biology 331:417-431

* J.M. Gonzales, M. Jimenez, M. Velez, J. Mingorance, J.M. Andreu, M. Vincente, G. Rivas. (2003) Essential cell division protein FtsZ assembless into one monomer-thick ribbons under conditions resembling the crowded intracellular environment.  Journal of Biological Chemistry 278:37664-37671

* M.A. Sanchez, L. Velasco, E. Palacian. (2003) Structure-function relationships in nucleosomal arrays containing linker histone H5.  Biochimica et Biophysica Acta 1628:177-185

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* G. Zhao, P. Ceci, A. Ilari, L. Giangiacomo, T.M. Laue, E. Chiancone, N.D. Chasteen. (2002) Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells.  Journal of Biological Chemistry 277:27698-27696

* K. Langer, S. Balthasar, V. Vogel, N. Dinauer, H. von Briesen, and D. Schubert (2003) Optimization for the preparation process for human serum albumin (HSA) nanoparticles. Int. Journal of Pharmaceutics 257:169-180

* C.L.L. Pham, D.M. Hatters, L.J. Lawrence, and G.J. Howlett. (2002) Cross-linking and amyloid formation by N- and C-terminal cysteine derivatives of human apolipoprotein C-II.  Biochemistry 41:41313-41322

* D. Gell, Y. Kong, S.A. Eaton, M.J. Weiss, and J.P. Mackay. (2002) Biophysical characterization of the alpha-globin binding protein alpha-hemoglobin stabilizing protein.  Journal of Biological Chemistry 277:40602-40609

* D.M Hatters, M.R. Wilson, S.B. Easterbrook-Smith, G.J. Howlett. (2002) Suppression of apoilpoprotein C-II amyloid formation by the extracellular chaperone, clusterin.  European Journal of Biochemistry 269:2789-2794

* R.J. Lewis, D.J. Scott, J.A. Brannigan, J.C. Ladds, M.A. Cervin, Spiegelman, J.G. Hoggett, I.B. Barak, A.J. Wilkonson. (2002) Dimer formation and transcription activation in the sporulation-response regulator Spo0A.  Journal of Molecular Biology 316:235-245

* D.M. Hatters, A.P. Minton, G.J. Howlett (2002) Macromolecular crowding accelerates amyloid formation by human apolipoprotein C-II.  Journal of Biological Chemistry 277:7824-7830

* Tziatzios C, Precup AA, Weidl CH, Schubert US, Schuck P, Durchschlag H, Maechtle W, Van den Broek JA, Schubert D (2002) Studies on the partial specific volume of a polyethylene glycol derivative in different solvent systems. Progr. Colloid Polym. Sci. 119:24-30

* Vogel V, Langer K, Balthasar S, Schuck P, Maechtle W, Hasse W, Van den Broek JA, Tziatzios C, Schubert D (2002) Characterization of serum albumin nanoparticles by sedimentation velocity analysis and electron microscopy. Progr. Colloid Polym. Sci. 119:31-36

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* P. Barbier, C. Gregoire, F. Devred, M. Sarrazin, V. Peyrot. (2001) In vitro effect of cryptophycin 52 on microtubule assembly and tubulin: Molecular modeling of the mechanism of action of a new antimitotic drug.  Biochemistry 40:13510-13519

* Solovyova, A., P. Schuck, L. Costenaro, C. Ebel (2001) Non-ideality by sedimentation velocity of halophilic malate dehydrogenase in complex solvents.  Biophys. J. 81:1868-1880

* S. Bernocco, S. Finet, C. Ebel, D. Eichenberger, M. Mazzorana, J. Farjanel, D.J.S. Hulmes. (2001) Biophysical Characterization of the C-propeptide trimer from human procollagen III reveals a tri-lobed structure.  Journal of Biological Chemistry 276:48930-48936

* Franzetti B, Schoehn G, Ebel C, Gagnon J, Ruigrok RW, Zaccai G. (2001) Characterization of a novel complex from halophilic archaebacteria, which displays chaperone-like activities in vitro.  Journal of Biological Chemistry 276:29906-29914

* D.M. Hatters, L.J. Lawrence, G.J. Howlett (2001) Sub-micellar phospholipid accelerates amyloid formation by apolipoprotein C-II.  FEBS Letters 494:220-224

* C. Tziatzios, H. Durchschlag, C.H. Weidl, C. Eschbaumer, W. Maechtle, P. Schuck, U.S. Schubert, and D. Schubert (2001) Ultracentrifugation studies on the solution properties of supramolecular building blocks for polymers. Potential, problems, and solutions. In: Synthetic Macromolecules with Higher Structural Order, ACS Symposium Series

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* D.M. Hatters, C.E. MacPhee, L.J. Lawrence, W.H. Sawyer, G.J. Howlett (2000) Human apolipoprotein C-II forms twisted amyloid ribbons and closed loops. Biochemistry 39:8276-8283

* S.G. Yao, G.J. Howlett, R.S. Norton (2000) Peptide self-association in aqueous trifluoroethanol monitored by pulsed field gradient NMR diffusion measurements. J. Biomol. NMR 16:109-119

* C. Tziatzios, H. Durchschlag, J.J. Gonzáles, E. Albertini, P. Prados, J. de Mendoza, C. Eschbaumer, U.S. Schubert, P. Schuck, and D. Schubert (2000) Characterization of supramolecular assemblies by analytical ultracentrifugation: Potential, problems and application to Co coordination arrays and calixarenes. Polymer Preprints 41:934-935

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* Reiter Y, Schuck P, Boyd LF, Plaksin D (1999) An antibody single-domain phage display library of a native heavy chain variable region: Isolation of functional single-domain VH molecules with a unique interface. Journal of Molecular Biology 290:685-698

* D. Schubert, C. Tziatzios, P. Schuck, and U.S. Schubert (1999) Characterizing the solution properties of supramolecular systems by analytical ultracentrifugation. Chemistry – A European Journal 5:1377-1383

* P. Schuck (1999) Sedimentation equilibrium analysis of interference optical data by systematic noise decomposition. Analytical Biochemistry 272:199-208.  

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* P. Schuck and D.B. Millar. (1998) Rapid determination of molar mass in Archibald experiments by direct analysis using the Lamm equation. Analytical Biochemistry 259:48-53.  

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* MacPhee, C. E., M. A. Perugini, W. H. Sawyer, and G. J. Howlett. (1997). Trifluroethanol induces the self-association of specific amphipathic peptides. FEBS Letters. 416:265-268.

 

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selected publications used for the development of sedfit:

from the AUC literature:

* O. Lamm. (1929) Die Differentialgleichung der Ultrazentrifugierung. Ark. Mat. Astr. Fys. 21B:1-4

* J.-M. Claverie, H. Dreux and R. Cohen. (1975) Sedimentation of generalized systems of interacting particles. I. Solutions of systems of complete Lamm equations.  Biopolymers 14:1685-1700

* K.E. van Holde and W.O. Weischet. (1978) Boundary analysis of sedimentation velocity experiments with monodisperse and paucidisperse solutes. Biopolymers 17:1387-1403

* D.J. Cox and R.S. Dale. (1981) Simulation of transport experiments for interacting systems. In: Protein-Protein Interactions. C. Frieden and L.W. Nichol, eds, Wiley, New York

* J.R. Cann and G. Kegeles. (1974) Theory of sedimentation for kinetically controlled dimerization reactions. Biochemistry 13:1868-1874

 

key references for mathematics, statistics, and programming

* C.L. Lawson and R.J. Hanson. (1974) Solving Least Squares Problems. Prentice-Hall, Englewood Cliffs, New Jersey [key reference for the algebraic treatment of least-squares problems, includes an invaluable algorithm NNLS for ensuring non-negativity] 

* Ruhe, A., and P. Ĺ. Wedin. 1980. Algorithms for separable nonlinear least squares problems. SIAM Review. 22:318-337. [key technique for the systematic noise decomposition]

* Bevington, P. R., and D. K. Robinson. 1992. Data reduction and error analysis for the physical sciences. Mc-Graw-Hill, New York. [great introduction and reference for statistics]

* S.W. Provencher. (1982) A constrained regularization method for inverting data represented by linear algebraic or integral equations. Comp. Phys. Comm. 27:213-227 [the strategy for size-distribution analyses]

* O.C. Zienkiewicz and R.L. Taylor. (1991) The Finite Element Method. 4th ed, Vol. 2, McGraw-Hill, London [a variety of finite element approaches]

* W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery. (1992) Numerical Recipes in C. University Press, Cambridge [standard reference for mathematical computer algorithms] 

* J. Crank and P. Nicholson. (1947) A practical method for numerical evaluation of solutions of partial differential equations of the heat-conducting type. Proc. Cambridge Philos. Soc. 43:50-67 [an efficient strategy to achieve higher precision in the evolution of the Lamm equation solutions]

* D.S. Sivia (1996) Data Analysis. A Bayesian Tutorial.  Clarendon Press, Oxford.